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more senselab removal and fixes #2904

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Jun 17, 2024
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2 changes: 1 addition & 1 deletion docs/courses/mpi_parallelization.rst
Original file line number Diff line number Diff line change
Expand Up @@ -43,6 +43,6 @@ Unfortunately MPI can't be a part of the binary installation because I don't kno
Going Further
----------

The ring model from the `above ModelDB entry <https://modeldb.science/96444>`_ is a good next step. See also the documentation for the `ParallelContext <https://nrn.readthedocs.io/en/latest/hoc/modelspec/programmatic/network/parcon.html?highlight=parallelcontext>`_ class, especialy the subset of methods gathered under the `ParallelNetwork <https://nrn.readthedocs.io/en/latest/hoc/modelspec/programmatic/network/parcon.html?highlight=parallelcontext>`_ heading. A large portion of the `ParallelNetManager <https://nrn.readthedocs.io/en/latest/hoc/modelspec/programmatic/network/parnet.html?highlight=parallelnetmanager>`_ wrapper is better off done directly from the underlying ParallelContext though it can be mined for interesting pieces. A good place to find the most recent idioms is the NEURON implementation of the Vogels and Abbott model found in the `Brette et al. ModelDB entry <https://senselab.med.yale.edu/ModelDB/ShowModel?model=83319#tabs-1>`_. However, to run in parallel, the NetCon delay between cells needs to be set greater than zero.
The ring model from the `above ModelDB entry <https://modeldb.science/96444>`_ is a good next step. See also the documentation for the `ParallelContext <https://nrn.readthedocs.io/en/latest/hoc/modelspec/programmatic/network/parcon.html?highlight=parallelcontext>`_ class, especialy the subset of methods gathered under the `ParallelNetwork <https://nrn.readthedocs.io/en/latest/hoc/modelspec/programmatic/network/parcon.html?highlight=parallelcontext>`_ heading. A large portion of the `ParallelNetManager <https://nrn.readthedocs.io/en/latest/hoc/modelspec/programmatic/network/parnet.html?highlight=parallelnetmanager>`_ wrapper is better off done directly from the underlying ParallelContext though it can be mined for interesting pieces. A good place to find the most recent idioms is the NEURON implementation of the Vogels and Abbott model found in the `Brette et al. ModelDB entry <https://modeldb.science/83319>`_. However, to run in parallel, the NetCon delay between cells needs to be set greater than zero.


2 changes: 1 addition & 1 deletion docs/guide/how_to_get_started_with_neuron.rst
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Expand Up @@ -41,7 +41,7 @@ To learn how to use NMODL to add new mechanisms to NEURON:
NEURON comes with a bunch of mod files that can serve as starting points for "programming by example." Under MSWin the default mechanisms (hh, pas, expsyn etc.) are in ``c:\nrn\src\nrnoc`` (on my Linux box this is ``/usr/local/src/nrn-x.x/src/nrnoc``). A large collection of mod files is in ``c:\nrn\examples\nrniv\nmodl`` (Linux ``/usr/local/src/nrn-x.x/share/examples/nrniv/nmodl``).

4.
You may also find useful examples in `ModelDB <https://smodeldb.science>`_.
You may also find useful examples in `ModelDB <https://modeldb.science>`_.

For courses about NEURON, see the :ref:`Course Exercises <exercises2018>` page and the :ref:`Training Videos <training_videos>` page.

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