Skip to content

Commit

Permalink
Remove usage of MCellRan4
Browse files Browse the repository at this point in the history
  • Loading branch information
Nicolas Cornu committed Jan 31, 2024
1 parent 764070a commit 2fc44a4
Show file tree
Hide file tree
Showing 12 changed files with 33 additions and 281 deletions.
1 change: 0 additions & 1 deletion cmake/NeuronFileLists.cmake
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,6 @@ set(STRUCTURED_HEADER_FILES_TO_INSTALL
neuron/container/generic_data_handle.hpp neuron/container/non_owning_soa_identifier.hpp
neuron/model_data_fwd.hpp)
set(HEADER_FILES_TO_INSTALL
gnu/mcran4.h
gnu/nrnran123.h
nrniv/backtrace_utils.h
nrniv/bbsavestate.h
Expand Down
1 change: 0 additions & 1 deletion src/gnu/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,6 @@ add_library(
Geom.cpp
HypGeom.cpp
LogNorm.cpp
mcran4.cpp
NegExp.cpp
Normal.cpp
NrnRandom123RNG.cpp
Expand Down
139 changes: 0 additions & 139 deletions src/gnu/mcran4.cpp

This file was deleted.

40 changes: 0 additions & 40 deletions src/gnu/mcran4.h

This file was deleted.

9 changes: 6 additions & 3 deletions src/nrniv/kschan.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -279,9 +279,12 @@ static double ks_vres(void* v) {

static double ks_rseed(void* v) {
if (ifarg(1)) {
KSSingle::idum_ = (unsigned int) chkarg(1, 0, 1e9);
nrnran123_setseq(KSSingle::rand_state, static_cast<std::uint32_t>(chkarg(1, 0, 1e9)), 0);
}
return (double) KSSingle::idum_;
std::uint32_t seq;
char which;
nrnran123_getseq(KSSingle::rand_state, &seq, &which);
return (double) seq;
}

static double ks_usetable(void* v) {
Expand Down Expand Up @@ -804,7 +807,7 @@ void KSChan_reg() {
ksgate_sym = hoc_lookup("KSGate");
kstrans_sym = hoc_lookup("KSTrans");
KSSingle::vres_ = 0.1;
KSSingle::idum_ = 0;
KSSingle::rand_state = nrnran123_newstream(0, 0);
}

// param is gmax, g, i --- if change then change numbers below
Expand Down
2 changes: 1 addition & 1 deletion src/nrniv/kssingle.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -130,7 +130,7 @@
extern NetCvode* net_cvode_instance;

double KSSingle::vres_;
unsigned int KSSingle::idum_;
nrnran123_State* KSSingle::rand_state;

KSSingle::KSSingle(KSChan* c) {
// implemenation assumes one ks gate complex with power 1
Expand Down
9 changes: 4 additions & 5 deletions src/nrniv/kssingle.h
Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,7 @@
#include <mymath.h>
#include <kschan.h>
#include <netcon.h>

#include <mcran4.h>
#include <nrnran123.h>

class KSSingleTrans;
class KSSingleState;
Expand Down Expand Up @@ -71,10 +70,10 @@ class KSSingle {
return MyMath::eq(x, y, vres_);
}
double exprand() {
return -log(mcell_ran4a(&idum_));
return nrnran123_negexp(rand_state);
}
double unifrand(double range) {
return mcell_ran4a(&idum_) * range;
return nrnran123_dblpick(rand_state) * range;
}
int rvalrand(int);

Expand All @@ -84,7 +83,7 @@ class KSSingle {
double* rval_;
bool uses_ligands_;
static double vres_;
static unsigned int idum_;
static nrnran123_State* rand_state;

static unsigned long singleevent_deliver_;
static unsigned long singleevent_move_;
Expand Down
1 change: 0 additions & 1 deletion src/oc/hoc_init.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -255,7 +255,6 @@ void hoc_init(void) /* install constants and built-ins table */
}
}

set_use_mcran4(false);
nrn_xopen_broadcast_ = 255;
extern void hoc_init_space(void);
hoc_init_space();
Expand Down
30 changes: 11 additions & 19 deletions src/oc/oc_mcran4.cpp
Original file line number Diff line number Diff line change
@@ -1,41 +1,33 @@
#include "hocdec.h"
#include "mcran4.h"
#include "nrnran123.h"

int use_mcell_ran4_;

void set_use_mcran4(bool value) {
use_mcell_ran4_ = value ? 1 : 0;
}

bool use_mcran4() {
return use_mcell_ran4_ != 0;
}
static const nrnran123_State* state = nrnran123_newstream(0, 0);

void hoc_mcran4() {
uint32_t idx;
double* xidx;
double x;
xidx = hoc_pgetarg(1);
idx = (uint32_t) (*xidx);
x = mcell_ran4a(&idx);
*xidx = idx;
nrnran123_setseq(state, idx, 0);

Check failure on line 12 in src/oc/oc_mcran4.cpp

View workflow job for this annotation

GitHub Actions / ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined)

no matching function for call to 'nrnran123_setseq'
x = nrnran123_dblpick(state);

Check failure on line 13 in src/oc/oc_mcran4.cpp

View workflow job for this annotation

GitHub Actions / ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined)

no matching function for call to 'nrnran123_dblpick'
*xidx = idx + 1;
hoc_ret();
hoc_pushx(x);
}
void hoc_mcran4init() {
double prev = mcell_lowindex();
std::uint32_t seq;
char which;
nrnran123_getseq(state, &seq, &which);

Check failure on line 21 in src/oc/oc_mcran4.cpp

View workflow job for this annotation

GitHub Actions / ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined)

no matching function for call to 'nrnran123_getseq'
double prev = static_cast<double>(seq);
if (ifarg(1)) {
uint32_t idx = (uint32_t) chkarg(1, 0., 4294967295.);
mcell_ran4_init(idx);
nrnran123_setseq(state, idx, 0);

Check failure on line 25 in src/oc/oc_mcran4.cpp

View workflow job for this annotation

GitHub Actions / ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined)

no matching function for call to 'nrnran123_setseq'
}
hoc_ret();
hoc_pushx(prev);
}
void hoc_usemcran4() {
double prev = (double) use_mcell_ran4_;
if (ifarg(1)) {
use_mcell_ran4_ = (int) chkarg(1, 0., 1.);
}
hoc_ret();
hoc_pushx(prev);
hoc_pushx(0);
}
2 changes: 0 additions & 2 deletions src/oc/oc_mcran4.hpp
Original file line number Diff line number Diff line change
@@ -1,5 +1,3 @@
void set_use_mcran4(bool value);
bool use_mcran4();
void hoc_mcran4();
void hoc_mcran4init();
void hoc_usemcran4();
16 changes: 3 additions & 13 deletions src/oc/scoprand.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -23,8 +23,7 @@ static char RCSid[] = "random.cpp,v 1.4 1999/01/04 12:46:49 hines Exp";
#endif

#include <math.h>
#include "oc_mcran4.hpp"
#include "mcran4.h"
#include "nrnran123.h"
#include "scoplib.h"
static uint32_t value = 1;

Expand Down Expand Up @@ -59,17 +58,8 @@ static uint32_t value = 1;
*--------------------------------------------------------------------------- */

double scop_random(void) {
if (use_mcran4()) {
/*perhaps 4 times slower but much higher quality*/
return mcell_ran4a(&value);
} else {
uint32_t a = 2147437301, c = 453816981,
/* m = 2^32 - 1, the largest long int value that can be represented */
/*m = 0xFFFFFFFF;*/ /* limited to 32 bit integers*/
m = ~0;
value = a * value + c;
return (fabs((double) value / (double) m));
}
auto *rng = nrnran123_newstream(value, 0);
return nrnran123_dblpick(rng);
}

/*-----------------------------------------------------------------------------
Expand Down
Loading

0 comments on commit 2fc44a4

Please sign in to comment.