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Develop #124

Merged
merged 12 commits into from
Sep 18, 2024
Merged

Develop #124

merged 12 commits into from
Sep 18, 2024

Commits on Jul 13, 2024

  1. Fixing how neat was counting input variants

    @joshfactorial
    joshfactorial committed Jul 13, 2024
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  2. Updating gen_mut_model to output and read proper trinucleotide count … 

    …files
    @joshfactorial
    joshfactorial committed Jul 13, 2024
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Commits on Jul 15, 2024

  1. Removed binned scoring

    @joshfactorial
    joshfactorial committed Jul 15, 2024
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Commits on Aug 22, 2024

  1. Couple small edits to vcf_func to improve time. Seems the contig vari… 

    …ants container is eating up all my memory, trying to debug that
    @joshfactorial
    joshfactorial committed Aug 22, 2024
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  2. Normalizing deletion model

    @joshfactorial
    joshfactorial committed Aug 22, 2024
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  3. Normalizing insertion model

    @joshfactorial
    joshfactorial committed Aug 22, 2024
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  4. Converting weights to probabilities

    @joshfactorial
    joshfactorial committed Aug 22, 2024
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Commits on Aug 23, 2024

  1. Fixing an issue in gen_mut_model where it was exporting the wrong val… 

    …use. We needed the probabilities, not the counts
    @joshfactorial
    joshfactorial committed Aug 23, 2024
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  2. found a slight environment issue

    @joshfactorial
    joshfactorial committed Aug 23, 2024
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Commits on Aug 28, 2024

  1. Cleaning up test bugs

    @joshfactorial
    joshfactorial committed Aug 28, 2024
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  2. accidentally changed a variable name

    @joshfactorial
    joshfactorial committed Aug 28, 2024
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Commits on Sep 18, 2024

  1. Merge branch 'main' into develop

    @joshfactorial
    joshfactorial authored Sep 18, 2024
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