The BRAINSStandAlone is a harness to assist in building the many
BRAINSTools under development.

Developers should run the "./Utilities/SetupForDevelopment.sh" script to get started.


Example session for a clean build:
mkdir ~/src/mytester
cd ~/src/mytester
git clone git://github.com/BRAINSia/BRAINSStandAlone.git
cd BRAINSStandAlone/
bash ./Utilities/SetupForDevelopment.sh
mkdir -p ../BRAINSStandAlone-build
cd ../BRAINSStandAlone-build/
CC=/usr/bin/gcc-4.2 CXX=/usr/bin/g++-4.2 ccmake ../BRAINSStandAlone -DUSE_BRAINSFit:BOOL=ON -DUSE_BRAINSConstellationDetector:BOOL=ON -DUSE_BRAINSABC:BOOL=ON
make -j24 -k ; ## NOTE:  The fetching of data still has problems with parallel builds, so we need to restart it a efw times
make
make
make