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added first harvest attempt to characterization module
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Hanke committed Jan 23, 2024
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -5,5 +5,6 @@ examples/catalog-v001.xml
modules/.DS_Store
.env
modules/iao.rdf
modules/chmo.owl
modules/pmdco-qualities-no_pato.ttl
modules/curated_pmdco-qualities.rdf
11 changes: 10 additions & 1 deletion modules/README.md
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Expand Up @@ -68,6 +68,15 @@ Modules:
- a lot of mechanical qualities as subclasses of morphological quality
- reuse of pato size, shape, texture, structure, color, odor and spatial pattern as morphological qualities (curate_qualities.ipynb)
- reuse of organismal qualities and cellular qualities as subclass of biological quality (curate_qualities.ipynb)
- translations to german for 856 trough text-davinci-003 model (curate_qualities.ipynb), and personally revised
- translations to german for 856 through text-davinci-003 model (curate_qualities.ipynb), and personally revised

curently 991, terms 857 [pato](https://obofoundry.org/ontology/pato.html) terms referenced with [Imported From](http://purl.obolibrary.org/obo/IAO_0000412)


## PMDco-Characterization features

- subclass hierarchy to [obi:PlannedProcess](http://purl.obolibrary.org/obo/OBI_0000011) covering analysis methods both physical, mechanical and chemical
- reuse of chmo anaytical processes (curate_characterization.ipynb)
- translations to german for 95 labels, and personally revised

curently 368, terms 250 [chmo](http://purl.obolibrary.org/obo/chmo.owl) terms referenced with [Imported From](http://purl.obolibrary.org/obo/IAO_0000412)
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