added Dockerfile

Dockerfile

@@ -0,0 +1,64 @@
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+
+# To build using this image
+# docker build -t zenkavi/hssm:0.0.3 -f Dockerfile .
+
+# HSSM images built with this Dockerfile can be found at zenkavi/hssm
+# docker pull zenkavi/hssm
+
+ARG BASE_CONTAINER=jupyter/minimal-notebook:python-3.9
+FROM $BASE_CONTAINER
+
+USER root
+
+# ffmpeg for matplotlib anim & dvipng for latex labels
+RUN apt-get update && \
+    apt-get upgrade -y && \
+    apt-get install -y build-essential && \
+    apt-get install -y --no-install-recommends apt-utils && \
+    apt-get install -y --no-install-recommends ffmpeg dvipng && \
+    apt install -y graphviz &&\
+    rm -rf /var/lib/apt/lists/*
+
+USER $NB_UID
+
+## TODO: Move these to a requirements.txt and install in a virtual env instead of as root
+RUN pip install --upgrade pip && \
+    pip install --no-cache-dir "pytest>=7.3.1" && \
+    pip install --no-cache-dir "black>=23.7.0" && \
+    pip install --no-cache-dir "mypy>=1.4.1" && \
+    pip install --no-cache-dir "pre-commit>=2.20.0" && \
+    pip install --no-cache-dir "jupyterlab>=4.0.2" && \
+    pip install --no-cache-dir "ipykernel>=6.16.0" && \
+    pip install --no-cache-dir "git+https://github.com/brown-ccv/hddm-wfpt.git" && \
+    pip install --no-cache-dir "ipywidgets>=8.0.3" && \
+    pip install --no-cache-dir "graphviz>=0.20.1" && \
+    pip install --no-cache-dir "ruff>=0.0.272" && \
+    pip install --no-cache-dir "numpyro>=0.12.1" && \
+    pip install --no-cache-dir "mkdocs>=1.4.3" && \
+    pip install --no-cache-dir "mkdocs-material>=9.1.17" && \
+    pip install --no-cache-dir "mkdocstrings-python>=1.1.2" && \
+    pip install --no-cache-dir "mkdocs-jupyter>=0.24.1" && \
+    # pip install --no-cache-dir "hssm>=0.1.2" && \
+    pip install git+https://github.com/lnccbrown/HSSM.git && \
+    fix-permissions "/home/${NB_USER}"
+
+
+# Import matplotlib the first time to build the font cache.
+ENV XDG_CACHE_HOME="/home/${NB_USER}/.cache/"
+
+RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" &&\
+     fix-permissions "/home/${NB_USER}"
+
+USER $NB_UID
+WORKDIR $HOME
+
+# Create a folder for example
+RUN mkdir -p /home/$NB_USER/docs/tutorials && \
+    mkdir -p /home/$NB_USER/docs/getting_started && \
+    fix-permissions /home/$NB_USER
+
+# Copy example data and scripts to the example folder
+COPY /docs/tutorials /home/${NB_USER}/docs/tutorials
+COPY /docs/getting_started /home/${NB_USER}/docs/getting_started

docs/tutorials/main_tutorial.ipynb

@@ -7942,7 +7942,8 @@
     }
    ],
    "source": [
-    "az.summary(infer_data_reg_v_a, var_names=[\"~rt,response_a\"])"
+    "# az.summary(infer_data_reg_v_a, var_names=[\"~rt,response_obs\"])\n",
+    "az.summary(infer_data_reg_v_a, var_names=[\"~a\"])"
    ]
   },
   {