style: pre-commit fixes

docs/rmg-commands.rst

@@ -4,7 +4,7 @@ remage macro command reference
 Command directory path : /RMG/
 ------------------------------
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * */RMG/Manager/*: ``General commands for controlling the application``
  * */RMG/Output/*: ``Commands for controlling the simulation output``
  * */RMG/Processes/*: ``Commands for controlling physics processes``
@@ -17,7 +17,7 @@ Command directory path : /RMG/Manager/
 
 General commands for controlling the application
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * */RMG/Manager/Logging/*: ``Commands for controlling application logging``
  * */RMG/Manager/Randomization/*: ``Commands for controlling randomization settings``
  * *Interactive*: ``Enable interactive mode``
@@ -48,7 +48,7 @@ Command directory path : /RMG/Manager/Logging/
 
 Commands for controlling application logging
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *LogLevel*: ``Set verbosity level of application log``
 
 Command /RMG/Manager/Logging/LogLevel
@@ -66,7 +66,7 @@ Command directory path : /RMG/Manager/Randomization/
 
 Commands for controlling randomization settings
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *RandomEngine*: ``Select the random engine (CLHEP)``
  * *Seed*: ``Select the initial seed for randomization (CLHEP::HepRandom::setTheSeed)``
  * *InternalSeed*: ``Select the initial seed for randomization by using the internal CLHEP table``
@@ -112,7 +112,7 @@ Command directory path : /RMG/Output/
 
 Commands for controlling the simulation output
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * */RMG/Output/Germanium/*: ``Commands for controlling output from hits in germanium detectors.``
  * */RMG/Output/Vertex/*: ``Commands for controlling output of primary vertices.``
  * */RMG/Output/Scintillator/*: ``Commands for controlling output from hits in scintillator detectors.``
@@ -142,7 +142,7 @@ Command directory path : /RMG/Output/Germanium/
 
 Commands for controlling output from hits in germanium detectors.
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *SetEdepCutLow*: ``Set a lower energy cut that has to be met for this event to be stored.``
  * *SetEdepCutHigh*: ``Set an upper energy cut that has to be met for this event to be stored.``
  * *AddDetectorForEdepThreshold*: ``Take this detector into account for the filtering by /EdepThreshold.``
@@ -199,7 +199,7 @@ Command directory path : /RMG/Output/Vertex/
 
 Commands for controlling output of primary vertices.
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *StorePrimaryParticleInformation*: ``Store information on primary particle details (not only vertex data).``
  * *SkipPrimaryVertexOutput*: ``Do not store vertex/primary particle data.``
 
@@ -226,7 +226,7 @@ Command directory path : /RMG/Output/Scintillator/
 
 Commands for controlling output from hits in scintillator detectors.
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *SetEdepCutLow*: ``Set a lower energy cut that has to be met for this event to be stored.``
  * *SetEdepCutHigh*: ``Set an upper energy cut that has to be met for this event to be stored.``
  * *AddDetectorForEdepThreshold*: ``Take this detector into account for the filtering by /EdepThreshold.``
@@ -273,7 +273,7 @@ Command directory path : /RMG/Processes/
 
 Commands for controlling physics processes
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * */RMG/Processes/Stepping/*: ``Commands for controlling physics processes``
  * *Realm*: ``Set simulation realm (cut values for particles in (sensitive) detector``
  * *OpticalPhysics*: ``Add optical processes to the physics list``
@@ -370,7 +370,7 @@ Command directory path : /RMG/Processes/Stepping/
 
 Commands for controlling physics processes
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *DaughterNucleusMaxLifetime*: ``Determines which unstable daughter nuclei will be killed, if they are at rest, depending on their lifetime.``
 
 Command /RMG/Processes/Stepping/DaughterNucleusMaxLifetime
@@ -395,7 +395,7 @@ Command directory path : /RMG/Geometry/
 
 Commands for controlling geometry definitions
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *GDMLDisableOverlapCheck*: ``Disable the automatic overlap check after loading a GDML file``
  * *GDMLOverlapCheckNumPoints*: ``Change the number of points sampled for overlap checks``
  * *IncludeGDMLFile*: ``Use GDML file for geometry definition``
@@ -474,7 +474,7 @@ Command directory path : /RMG/Generator/
 
 Commands for controlling generators
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * */RMG/Generator/MUSUNCosmicMuons/*: ``Commands for controlling the MUSUN µ generator``
  * */RMG/Generator/CosmicMuons/*: ``Commands for controlling the µ generator``
  * */RMG/Generator/Confinement/*: ``Commands for controlling primary confinement``
@@ -506,7 +506,7 @@ Command directory path : /RMG/Generator/MUSUNCosmicMuons/
 
 Commands for controlling the MUSUN µ generator
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *SetMUSUNFile*: ``Set the MUSUN input file``
 
 Command /RMG/Generator/MUSUNCosmicMuons/SetMUSUNFile
@@ -523,7 +523,7 @@ Command directory path : /RMG/Generator/CosmicMuons/
 
 Commands for controlling the µ generator
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *SkyShape*: ``Geometrical shape of the µ generation surface``
  * *SkyPlaneSize*: ``Length of the side of the sky, if it has a planar shape``
  * *SkyPlaneHeight*: ``Height of the sky, if it has a planar shape``
@@ -733,7 +733,7 @@ Command directory path : /RMG/Generator/Confinement/
 
 Commands for controlling primary confinement
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * */RMG/Generator/Confinement/Physical/*: ``Commands for setting physical volumes up for primary confinement``
  * */RMG/Generator/Confinement/Geometrical/*: ``Commands for setting geometrical volumes up for primary confinement``
  * *Reset*: ``Reset all parameters of vertex confinement, so that it can be reconfigured.``
@@ -790,7 +790,7 @@ Command directory path : /RMG/Generator/Confinement/Physical/
 
 Commands for setting physical volumes up for primary confinement
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *AddVolume*: ``Add physical volume(s) to sample primaries from.``
 
 Command /RMG/Generator/Confinement/Physical/AddVolume
@@ -810,7 +810,7 @@ Command directory path : /RMG/Generator/Confinement/Geometrical/
 
 Commands for setting geometrical volumes up for primary confinement
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * */RMG/Generator/Confinement/Geometrical/Sphere/*: ``Commands for setting geometrical dimensions of a sampling sphere``
  * */RMG/Generator/Confinement/Geometrical/Cylinder/*: ``Commands for setting geometrical dimensions of a sampling cylinder``
  * */RMG/Generator/Confinement/Geometrical/Box/*: ``Commands for setting geometrical dimensions of a sampling box``
@@ -876,7 +876,7 @@ Command directory path : /RMG/Generator/Confinement/Geometrical/Sphere/
 
 Commands for setting geometrical dimensions of a sampling sphere
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *InnerRadius*: ``Set inner radius``
  * *OuterRadius*: ``Set outer radius``
 
@@ -915,7 +915,7 @@ Command directory path : /RMG/Generator/Confinement/Geometrical/Cylinder/
 
 Commands for setting geometrical dimensions of a sampling cylinder
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *InnerRadius*: ``Set inner radius``
  * *OuterRadius*: ``Set outer radius``
  * *Height*: ``Set height``
@@ -1000,7 +1000,7 @@ Command directory path : /RMG/Generator/Confinement/Geometrical/Box/
 
 Commands for setting geometrical dimensions of a sampling box
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *XLength*: ``Set X length``
  * *YLength*: ``Set Y length``
  * *ZLength*: ``Set Z length``
@@ -1053,15 +1053,15 @@ Set Z length
 Command directory path : /RMG/Confinement/
 ------------------------------------------
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * */RMG/Confinement/FromFile/*: ``Commands for controlling reading event vertex positions from file``
 
 Command directory path : /RMG/Confinement/FromFile/
 ---------------------------------------------------
 
 Commands for controlling reading event vertex positions from file
 
-* **Sub-directories**: 
+* **Sub-directories**:
  * *FileName*: ``Set name of the file containing vertex positions. See the documentation for a specification of the format.``
 
 Command /RMG/Confinement/FromFile/FileName