wip - subsidence calculations in polygonal tundra #81
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - '**' | |
| jobs: | |
| container-test-job: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: rfiorella/e3sm-dev:latest | |
| steps: | |
| - name: Check out the NGEE-Arctic-E3SM repo | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.ref }} | |
| submodules: true | |
| - name: Setup cime and input datafiles | |
| run: | | |
| mkdir ~/.cime | |
| cp /home/e3smuser/.cime/* /github/home/.cime/ | |
| git clone https://github.com/rfiorella/pt-e3sm-inputdata /home/e3smuser/inputdata | |
| cd /home/e3smuser/inputdata/lnd/clm2/firedata | |
| tar -zxvf clmforc.Li_2012_hdm_0.5x0.5_AVHRR_simyr1850-2010_c130401.nc.tar.gz | |
| cd /home/e3smuser/inputdata/atm/datm7/NASA_LIS/ | |
| tar -zxvf clmforc.Li_2012_climo1995-2011.T62.lnfm_c130327.nc.tar.gz | |
| tar -zxvf clmforc.Li_2012_climo1995-2011.T62.lnfm_Total_c140423.nc.tar.gz | |
| ls -v /home/e3smuser/inputdata/atm/datm7/NASA_LIS/ | |
| - name: create new case and setup | |
| run: | | |
| cd cime/scripts && ./create_newcase --mach docker --res ELM_USRDAT --compset ICB1850CNPRDCTCBC --case ~/output/ci_test \ | |
| && cd ~/output/ci_test | |
| ./xmlchange MOSART_MODE=NULL,DOUT_S=FALSE,DIN_LOC_ROOT=/home/e3smuser/inputdata | |
| ./xmlchange DIN_LOC_ROOT_CLMFORC=/home/e3smuser/inputdata/atm/datm7 | |
| ./xmlchange ELM_USRDAT_NAME=1x1pt_AK-TLG | |
| ./xmlchange ATM_DOMAIN_PATH=/home/e3smuser/inputdata/share/domains/domain.clm | |
| ./xmlchange LND_DOMAIN_PATH=/home/e3smuser/inputdata/share/domains/domain.clm | |
| ./xmlchange ATM_DOMAIN_FILE=domain.lnd.1x1pt_teller-GRID_navy.nc | |
| ./xmlchange LND_DOMAIN_FILE=domain.lnd.1x1pt_teller-GRID_navy.nc | |
| ./xmlchange PIO_TYPENAME=netcdf,NTASKS=1,NTHRDS=1 | |
| ./xmlchange STOP_OPTION=nyears,STOP_N=5 | |
| ./xmlchange BATCH_SYSTEM=none | |
| echo "&clm_inparm" >> user_nl_elm | |
| echo " do_budgets = .false." >> user_nl_elm | |
| echo " use_nofire = .true." >> user_nl_elm | |
| echo " metdata_type = 'gswp3'" >> user_nl_elm | |
| echo " metdata_bypass = '/home/e3smuser/inputdata/atm/datm7/atm_forcing.datm7.GSWP3.0.5d.v2.c180716_NGEE-Grid/cpl_bypass_teller-Grid'" >> user_nl_elm | |
| echo " fsurdat = '/home/e3smuser/inputdata/lnd/clm2/surfdata_map/surfdata_1x1pt_teller-GRID_simyr1850_c360x720_c171002.nc'" >> user_nl_elm | |
| echo " stream_fldfilename_popdens = '/home/e3smuser/inputdata/lnd/clm2/firedata/clmforc.Li_2012_hdm_0.5x0.5_AVHRR_simyr1850-2010_c130401.nc'" >> user_nl_elm | |
| ./case.setup | |
| # add coupler bypass flag to cmake macros. | |
| echo 'string(APPEND CPPDEFS " -DCPL_BYPASS")' >> cmake_macros/universal.cmake | |
| ./case.build || cat /home/e3smuser/output/ci_test/bld/e3sm.bldlog.* | |
| ./case.submit --no-batch | |
| cat /home/e3smuser/output/ci_test/run/e3sm.log.* | |
| cat /home/e3smuser/output/ci_test/run/lnd.log.* | |