Skip to content

Commit

Permalink
update docker table
Browse files Browse the repository at this point in the history
  • Loading branch information
dmiller15 committed Feb 20, 2024
1 parent 32aa420 commit f9748e9
Show file tree
Hide file tree
Showing 2 changed files with 25 additions and 0 deletions.
11 changes: 11 additions & 0 deletions docs/dockers_consensus.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,11 @@
# Dockers of kfdrc-germline-snv-annot-workflow.cwl

TOOL|DOCKER
-|-
bcftools_annotate.cwl|pgc-images.sbgenomics.com/d3b-bixu/vcfutils:latest
bcftools_filter_vcf.cwl|pgc-images.sbgenomics.com/d3b-bixu/bvcftools:latest
bcftools_strip_ann.cwl|pgc-images.sbgenomics.com/d3b-bixu/vcfutils:latest
echtvar_anno.cwl|pgc-images.sbgenomics.com/d3b-bixu/echtvar:0.2.0
generic_rename_outputs.cwl|None
normalize_vcf.cwl|pgc-images.sbgenomics.com/d3b-bixu/vcfutils:latest
variant_effect_predictor_105.cwl|ensemblorg/ensembl-vep:release_105.0
14 changes: 14 additions & 0 deletions docs/dockers_somatic.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,14 @@
# Dockers of kfdrc-somatic-snv-annot-workflow.cwl

TOOL|DOCKER
-|-
add_strelka2_fields.cwl|pgc-images.sbgenomics.com/d3b-bixu/add-strelka2-fields:1.0.0
bcftools_filter_vcf.cwl|pgc-images.sbgenomics.com/d3b-bixu/bvcftools:latest
bcftools_strip_ann.cwl|pgc-images.sbgenomics.com/d3b-bixu/vcfutils:latest
echtvar_anno.cwl|pgc-images.sbgenomics.com/d3b-bixu/echtvar:0.2.0
gatk_variant_filter.cwl|pgc-images.sbgenomics.com/d3b-bixu/gatk:4.1.1.0
generic_rename_outputs.cwl|None
hotspots_annotation.cwl|quay.io/biocontainers/pysam:0.21.0--py310h41dec4a_1
kf_mskcc_vcf2maf.cwl|pgc-images.sbgenomics.com/d3b-bixu/kf_vcf2maf:v1.0.3
normalize_vcf.cwl|pgc-images.sbgenomics.com/d3b-bixu/vcfutils:latest
variant_effect_predictor_105.cwl|ensemblorg/ensembl-vep:release_105.0

0 comments on commit f9748e9

Please sign in to comment.