🐛 add cross-repo secret token #11

	name: Update Docker Tables

	on: [pull_request]

	permissions:
	contents: write
	pull-requests: write

	jobs:
	update-tables:
	name: Update Docker Tables
	runs-on: ubuntu-22.04
	steps:
	- id: checkout
	uses: actions/checkout@v3
	name: Checkout Repo
	with:
	ref: ${{ github.head_ref }}
	- id: make-germline-table
	name: Make Docker Table for Germline Workflow
	run: \|
	python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_consensus.md workflows/kfdrc-germline-snv-annot-workflow.cwl
	- id: make-somatic-table
	name: Make Docker Table for Somatic Workflow
	run: \|
	python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_somatic.md workflows/kfdrc-somatic-snv-annot-workflow.cwl
	- id: cpr
	name: Create Pull Request
	uses: peter-evans/create-pull-request@v5
	with:
	commit-message: update docker table
	title: Update Production WF Docker Tables
	body: \|
	Automated changes by [create-pull-request](https://github.com/peter-evans/create-pull-request) GitHub action.

	Docker tables for production workflows now have most up-to-date and complete list of Dockers.
	delete-branch: true
	branch: ${{ github.head_ref }}-adjust-dockers
	labels: bix-dev

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