- align -- sequence alignment
- helper -- help functions for programming
- interval -- deal with intervals
- ngs -- deal with NGS data
- parse -- parse reference files
- path -- path relevant functions
- seq -- convert sequences
- sam -- SAM/BAM file relevant functions
- extract_junc.py -- extract junctions from BAM files
- extract_region.py -- extract genomic regions
- fetch_geoinfo.py -- extract GEO information
Copyright (C) Xiao-Ou Zhang and contributors. See the LICENSE file for license rights and limitations (MIT)