seqlib -- a python library to facilitate high-throughput sequencing data analysis

Available libraries

• align -- sequence alignment
• helper -- help functions for programming
• interval -- deal with intervals
• ngs -- deal with NGS data
• parse -- parse reference files
• path -- path relevant functions
• seq -- convert sequences
• sam -- SAM/BAM file relevant functions

Available scripts

• extract_junc.py -- extract junctions from BAM files
• extract_region.py -- extract genomic regions
• fetch_geoinfo.py -- extract GEO information

License

Copyright (C) Xiao-Ou Zhang and contributors. See the LICENSE file for license rights and limitations (MIT)