Ensembl API CLI

This is cli for calling Ensembl API.
This project is currently at the experimental stage.
Not all endpoints are supported.
Only following endpoints and data types are callable.

Callable endpoints

Endpoint	Availabe Options
GET /sequence/id	object_type=transcript, content-type=text/xfasta, type

Download

Binaries are available at the release paga of Github.

How to use

From ID

This will get transctipt as fasta format.

$ ensemble_api_cli sequence id <ID>

From file

You can specify a file including IDs in each line.
Results are outputted at ./result directory.

$ ensembl_api_cli --directory <Path to directory>

Other options

Help option can be put for any command or subcommand.

$ ensembl_api_cli --help
$ ensembl_api_cli sequence id --help