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synchon committed Oct 23, 2024
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94 changes: 47 additions & 47 deletions pr-preview/pr-362/_sources/auto_examples/run_compute_parcel_mean.rst.txt
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Expand Up @@ -70,14 +70,14 @@ Set the logging level to info to see extra information
/__w/junifer/junifer/junifer/utils/logging.py:139: UserWarning: The '__version__' attribute is deprecated and will be removed in MarkupSafe 3.1. Use feature detection, or `importlib.metadata.version("markupsafe")`, instead.
vstring = str(getattr(module, "__version__", None))
2024-10-22 15:46:10,716 - JUNIFER - INFO - ===== Lib Versions =====
2024-10-22 15:46:10,716 - JUNIFER - INFO - numpy: 1.26.4
2024-10-22 15:46:10,716 - JUNIFER - INFO - scipy: 1.14.1
2024-10-22 15:46:10,716 - JUNIFER - INFO - pandas: 2.1.4
2024-10-22 15:46:10,716 - JUNIFER - INFO - nilearn: 0.10.4
2024-10-22 15:46:10,716 - JUNIFER - INFO - nibabel: 5.3.1
2024-10-22 15:46:10,716 - JUNIFER - INFO - junifer: 0.0.6.dev171
2024-10-22 15:46:10,716 - JUNIFER - INFO - ========================
2024-10-23 09:36:07,380 - JUNIFER - INFO - ===== Lib Versions =====
2024-10-23 09:36:07,380 - JUNIFER - INFO - numpy: 1.26.4
2024-10-23 09:36:07,380 - JUNIFER - INFO - scipy: 1.14.1
2024-10-23 09:36:07,380 - JUNIFER - INFO - pandas: 2.1.4
2024-10-23 09:36:07,380 - JUNIFER - INFO - nilearn: 0.10.4
2024-10-23 09:36:07,380 - JUNIFER - INFO - nibabel: 5.3.1
2024-10-23 09:36:07,380 - JUNIFER - INFO - junifer: 0.0.6.dev172
2024-10-23 09:36:07,380 - JUNIFER - INFO - ========================
Expand Down Expand Up @@ -111,28 +111,28 @@ Perform parcel aggregation on VBM GM data (3D) from OASIS dataset

.. code-block:: none
2024-10-22 15:46:10,723 - JUNIFER - INFO - Getting element sub-01
2024-10-22 15:46:10,723 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-10-22 15:46:10,723 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-10-22 15:46:10,725 - JUNIFER - INFO - Computing VBM_GM
2024-10-22 15:46:10,725 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-10-22 15:46:10,725 - JUNIFER - INFO - Parcellation parameters:
2024-10-22 15:46:10,725 - JUNIFER - INFO - resolution: 2.0
2024-10-22 15:46:10,725 - JUNIFER - INFO - n_rois: 100
2024-10-22 15:46:10,726 - JUNIFER - INFO - yeo_networks: 7
2024-10-22 15:46:10,726 - JUNIFER - INFO - At least one of the parcellation files are missing. Fetching using nilearn.
2024-10-23 09:36:07,386 - JUNIFER - INFO - Getting element sub-01
2024-10-23 09:36:07,386 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-10-23 09:36:07,386 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-10-23 09:36:07,387 - JUNIFER - INFO - Computing VBM_GM
2024-10-23 09:36:07,388 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-10-23 09:36:07,388 - JUNIFER - INFO - Parcellation parameters:
2024-10-23 09:36:07,388 - JUNIFER - INFO - resolution: 2.0
2024-10-23 09:36:07,388 - JUNIFER - INFO - n_rois: 100
2024-10-23 09:36:07,388 - JUNIFER - INFO - yeo_networks: 7
2024-10-23 09:36:07,389 - JUNIFER - INFO - At least one of the parcellation files are missing. Fetching using nilearn.
Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_100Parcels_7Networks_order.txt ...
...done. (0 seconds, 0 min)
Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_100Parcels_7Networks_order_FSLMNI152_2mm.nii.gz ...
...done. (0 seconds, 0 min)
2024-10-22 15:46:10,883 - JUNIFER - INFO - Loading parcellation /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-10-22 15:46:10,936 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-10-22 15:46:12,053 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-10-22 15:46:12,135 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpnqj9zk1n/parcellationsgbaukoup/Schaefer100x7.nii.gz -r /tmp/tmpnqj9zk1n/parcellationsgbaukoup/MNI152Lin_T1w_2.0.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/tmparkrqudj/parcellationsvcg3wcbb/Schaefer100x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-10-22 15:46:13,907 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-10-22 15:46:14,919 - JUNIFER - INFO - No storage specified, returning dictionary
2024-10-23 09:36:07,555 - JUNIFER - INFO - Loading parcellation /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-10-23 09:36:07,608 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-10-23 09:36:08,739 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-10-23 09:36:08,819 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmp9ukzxg9i/parcellations2b2e16s_/Schaefer100x7.nii.gz -r /tmp/tmp9ukzxg9i/parcellations2b2e16s_/MNI152Lin_T1w_2.0.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/tmpktuzzua6/parcellationspykrqpjt/Schaefer100x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-10-23 09:36:10,614 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-10-23 09:36:11,648 - JUNIFER - INFO - No storage specified, returning dictionary
dict_keys(['VBM_GM'])
(1, 100)
Expand Down Expand Up @@ -169,32 +169,32 @@ Perform parcel aggregation on BOLD data (4D) from SPM Auditory dataset

.. code-block:: none
2024-10-22 15:46:14,920 - JUNIFER - INFO - Getting element sub001
2024-10-23 09:36:11,649 - JUNIFER - INFO - Getting element sub001
Dataset created in /github/home/nilearn_data/spm_auditory
Data absent, downloading...
Downloading data from https://www.fil.ion.ucl.ac.uk/spm/download/data/MoAEpilot/MoAEpilot.zip ...
Downloaded 4603904 of 34212021 bytes (13.5%, 6.7s remaining) Downloaded 9420800 of 34212021 bytes (27.5%, 5.5s remaining) Downloaded 14598144 of 34212021 bytes (42.7%, 4.2s remaining) Downloaded 19595264 of 34212021 bytes (57.3%, 3.1s remaining) Downloaded 25108480 of 34212021 bytes (73.4%, 1.9s remaining) Downloaded 30236672 of 34212021 bytes (88.4%, 0.8s remaining) ...done. (8 seconds, 0 min)
Downloaded 3973120 of 34212021 bytes (11.6%, 7.7s remaining) Downloaded 7897088 of 34212021 bytes (23.1%, 6.7s remaining) Downloaded 10919936 of 34212021 bytes (31.9%, 6.5s remaining) Downloaded 14254080 of 34212021 bytes (41.7%, 5.7s remaining) Downloaded 17055744 of 34212021 bytes (49.9%, 5.1s remaining) Downloaded 19759104 of 34212021 bytes (57.8%, 4.4s remaining) Downloaded 22241280 of 34212021 bytes (65.0%, 3.8s remaining) Downloaded 24535040 of 34212021 bytes (71.7%, 3.2s remaining) Downloaded 26910720 of 34212021 bytes (78.7%, 2.5s remaining) Downloaded 29351936 of 34212021 bytes (85.8%, 1.7s remaining) Downloaded 31817728 of 34212021 bytes (93.0%, 0.8s remaining) ...done. (13 seconds, 0 min)
Extracting data from /github/home/nilearn_data/spm_auditory/sub001/MoAEpilot.zip..... done.
2024-10-22 15:46:25,372 - JUNIFER - INFO - Reading BOLD from /tmp/tmp0hosj18h/sub001_bold.nii.gz
2024-10-22 15:46:25,372 - JUNIFER - INFO - BOLD is of type NIFTI
2024-10-22 15:46:25,373 - JUNIFER - INFO - Reading T1w from /tmp/tmp0hosj18h/sub001_T1w.nii.gz
2024-10-22 15:46:25,373 - JUNIFER - INFO - T1w is of type NIFTI
2024-10-22 15:46:25,374 - JUNIFER - INFO - Computing BOLD
2024-10-22 15:46:25,374 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-10-22 15:46:25,375 - JUNIFER - INFO - Parcellation parameters:
2024-10-22 15:46:25,375 - JUNIFER - INFO - resolution: 3.0
2024-10-22 15:46:25,375 - JUNIFER - INFO - n_rois: 100
2024-10-22 15:46:25,375 - JUNIFER - INFO - yeo_networks: 7
2024-10-22 15:46:25,376 - JUNIFER - INFO - Loading parcellation /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-10-22 15:46:25,429 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-10-22 15:46:26,551 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-10-22 15:46:26,630 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpnqj9zk1n/parcellationslnu2q74e/Schaefer100x7.nii.gz -r /tmp/tmpnqj9zk1n/parcellationslnu2q74e/MNI152Lin_T1w_3.0.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/tmparkrqudj/parcellationsd8e0hxnx/Schaefer100x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-10-22 15:46:28,404 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-10-22 15:46:30,951 - JUNIFER - INFO - No storage specified, returning dictionary
2024-10-23 09:36:27,891 - JUNIFER - INFO - Reading BOLD from /tmp/tmpcui9t0jw/sub001_bold.nii.gz
2024-10-23 09:36:27,892 - JUNIFER - INFO - BOLD is of type NIFTI
2024-10-23 09:36:27,893 - JUNIFER - INFO - Reading T1w from /tmp/tmpcui9t0jw/sub001_T1w.nii.gz
2024-10-23 09:36:27,893 - JUNIFER - INFO - T1w is of type NIFTI
2024-10-23 09:36:27,894 - JUNIFER - INFO - Computing BOLD
2024-10-23 09:36:27,894 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-10-23 09:36:27,895 - JUNIFER - INFO - Parcellation parameters:
2024-10-23 09:36:27,895 - JUNIFER - INFO - resolution: 3.0
2024-10-23 09:36:27,895 - JUNIFER - INFO - n_rois: 100
2024-10-23 09:36:27,895 - JUNIFER - INFO - yeo_networks: 7
2024-10-23 09:36:27,897 - JUNIFER - INFO - Loading parcellation /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-10-23 09:36:27,951 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-10-23 09:36:29,075 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-10-23 09:36:29,155 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmp9ukzxg9i/parcellations9hz4ywq0/Schaefer100x7.nii.gz -r /tmp/tmp9ukzxg9i/parcellations9hz4ywq0/MNI152Lin_T1w_3.0.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/tmpktuzzua6/parcellations574xxona/Schaefer100x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-10-23 09:36:30,918 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-10-23 09:36:33,553 - JUNIFER - INFO - No storage specified, returning dictionary
dict_keys(['BOLD'])
(96, 100)

Expand All @@ -204,7 +204,7 @@ Perform parcel aggregation on BOLD data (4D) from SPM Auditory dataset

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 20.240 seconds)
**Total running time of the script:** (0 minutes 26.179 seconds)


.. _sphx_glr_download_auto_examples_run_compute_parcel_mean.py:
Expand Down
44 changes: 22 additions & 22 deletions pr-preview/pr-362/_sources/auto_examples/run_datagrabber_bids_datalad.rst.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -65,14 +65,14 @@ Set the logging level to info to see extra information
/__w/junifer/junifer/junifer/utils/logging.py:139: UserWarning: The '__version__' attribute is deprecated and will be removed in MarkupSafe 3.1. Use feature detection, or `importlib.metadata.version("markupsafe")`, instead.
vstring = str(getattr(module, "__version__", None))
2024-10-22 15:38:57,763 - JUNIFER - INFO - ===== Lib Versions =====
2024-10-22 15:38:57,764 - JUNIFER - INFO - numpy: 1.26.4
2024-10-22 15:38:57,764 - JUNIFER - INFO - scipy: 1.14.1
2024-10-22 15:38:57,764 - JUNIFER - INFO - pandas: 2.1.4
2024-10-22 15:38:57,764 - JUNIFER - INFO - nilearn: 0.10.4
2024-10-22 15:38:57,764 - JUNIFER - INFO - nibabel: 5.3.1
2024-10-22 15:38:57,764 - JUNIFER - INFO - junifer: 0.0.6.dev171
2024-10-22 15:38:57,764 - JUNIFER - INFO - ========================
2024-10-23 09:28:27,132 - JUNIFER - INFO - ===== Lib Versions =====
2024-10-23 09:28:27,132 - JUNIFER - INFO - numpy: 1.26.4
2024-10-23 09:28:27,132 - JUNIFER - INFO - scipy: 1.14.1
2024-10-23 09:28:27,132 - JUNIFER - INFO - pandas: 2.1.4
2024-10-23 09:28:27,132 - JUNIFER - INFO - nilearn: 0.10.4
2024-10-23 09:28:27,132 - JUNIFER - INFO - nibabel: 5.3.1
2024-10-23 09:28:27,133 - JUNIFER - INFO - junifer: 0.0.6.dev172
2024-10-23 09:28:27,133 - JUNIFER - INFO - ========================
Expand Down Expand Up @@ -153,17 +153,17 @@ In this case, each element of the DataGrabber is one session.

.. code-block:: none
2024-10-22 15:38:57,765 - JUNIFER - INFO - `datadir` is None, creating a temporary directory
2024-10-22 15:38:57,766 - JUNIFER - INFO - `datadir` set to /tmp/tmpcc2q9ymo/datadir
2024-10-23 09:28:27,134 - JUNIFER - INFO - `datadir` is None, creating a temporary directory
2024-10-23 09:28:27,134 - JUNIFER - INFO - `datadir` set to /tmp/tmpr1owz7qi/datadir
sub-03
sub-01
sub-05
sub-08
sub-02
sub-07
sub-09
sub-02
sub-06
sub-05
sub-03
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sub-01
sub-08
Expand Down Expand Up @@ -195,20 +195,20 @@ paths for the two types of data we want (T1w and BOLD).

.. code-block:: none
2024-10-22 15:39:01,095 - JUNIFER - INFO - `datadir` is None, creating a temporary directory
2024-10-22 15:39:01,096 - JUNIFER - INFO - `datadir` set to /tmp/tmpaeu3gh63/datadir
2024-10-22 15:39:03,441 - JUNIFER - INFO - Getting element sub-01
2024-10-22 15:39:03,441 - JUNIFER - INFO - Resolving path from pattern for T1w
2024-10-22 15:39:03,442 - JUNIFER - INFO - Resolving path from pattern for BOLD
{'T1w': {'space': 'native', 'path': PosixPath('/tmp/tmpaeu3gh63/datadir/example_bids/sub-01/anat/sub-01_T1w.nii.gz'), 'meta': {'datagrabber': {'class': 'PatternDataladDataGrabber', 'replacements': ['subject'], 'patterns': {'T1w': {'pattern': '{subject}/anat/{subject}_T1w.nii.gz', 'space': 'native'}, 'BOLD': {'pattern': '{subject}/func/{subject}_task-rest_bold.nii.gz', 'space': 'MNI152NLin6Asym'}}, 'partial_pattern_ok': False, 'confounds_format': None, 'types': ['T1w', 'BOLD'], 'uri': 'https://gin.g-node.org/juaml/datalad-example-bids', 'datalad_dirty': False, 'datalad_commit_id': 'b87897cbe51bf0ee5514becaa5c7dd76491db5ad', 'datalad_id': '8fddff30-6993-420a-9d1e-b5b028c59468'}, 'dependencies': set(), 'element': {'subject': 'sub-01'}}}, 'BOLD': {'space': 'MNI152NLin6Asym', 'path': PosixPath('/tmp/tmpaeu3gh63/datadir/example_bids/sub-01/func/sub-01_task-rest_bold.nii.gz'), 'meta': {'datagrabber': {'class': 'PatternDataladDataGrabber', 'replacements': ['subject'], 'patterns': {'T1w': {'pattern': '{subject}/anat/{subject}_T1w.nii.gz', 'space': 'native'}, 'BOLD': {'pattern': '{subject}/func/{subject}_task-rest_bold.nii.gz', 'space': 'MNI152NLin6Asym'}}, 'partial_pattern_ok': False, 'confounds_format': None, 'types': ['T1w', 'BOLD'], 'uri': 'https://gin.g-node.org/juaml/datalad-example-bids', 'datalad_dirty': False, 'datalad_commit_id': 'b87897cbe51bf0ee5514becaa5c7dd76491db5ad', 'datalad_id': '8fddff30-6993-420a-9d1e-b5b028c59468'}, 'dependencies': set(), 'element': {'subject': 'sub-01'}}}}
2024-10-23 09:28:30,717 - JUNIFER - INFO - `datadir` is None, creating a temporary directory
2024-10-23 09:28:30,717 - JUNIFER - INFO - `datadir` set to /tmp/tmpfw9_78_5/datadir
2024-10-23 09:28:32,911 - JUNIFER - INFO - Getting element sub-01
2024-10-23 09:28:32,911 - JUNIFER - INFO - Resolving path from pattern for T1w
2024-10-23 09:28:32,912 - JUNIFER - INFO - Resolving path from pattern for BOLD
{'T1w': {'space': 'native', 'path': PosixPath('/tmp/tmpfw9_78_5/datadir/example_bids/sub-01/anat/sub-01_T1w.nii.gz'), 'meta': {'datagrabber': {'class': 'PatternDataladDataGrabber', 'replacements': ['subject'], 'patterns': {'T1w': {'pattern': '{subject}/anat/{subject}_T1w.nii.gz', 'space': 'native'}, 'BOLD': {'pattern': '{subject}/func/{subject}_task-rest_bold.nii.gz', 'space': 'MNI152NLin6Asym'}}, 'partial_pattern_ok': False, 'confounds_format': None, 'types': ['T1w', 'BOLD'], 'uri': 'https://gin.g-node.org/juaml/datalad-example-bids', 'datalad_dirty': False, 'datalad_commit_id': 'b87897cbe51bf0ee5514becaa5c7dd76491db5ad', 'datalad_id': '8fddff30-6993-420a-9d1e-b5b028c59468'}, 'dependencies': set(), 'element': {'subject': 'sub-01'}}}, 'BOLD': {'space': 'MNI152NLin6Asym', 'path': PosixPath('/tmp/tmpfw9_78_5/datadir/example_bids/sub-01/func/sub-01_task-rest_bold.nii.gz'), 'meta': {'datagrabber': {'class': 'PatternDataladDataGrabber', 'replacements': ['subject'], 'patterns': {'T1w': {'pattern': '{subject}/anat/{subject}_T1w.nii.gz', 'space': 'native'}, 'BOLD': {'pattern': '{subject}/func/{subject}_task-rest_bold.nii.gz', 'space': 'MNI152NLin6Asym'}}, 'partial_pattern_ok': False, 'confounds_format': None, 'types': ['T1w', 'BOLD'], 'uri': 'https://gin.g-node.org/juaml/datalad-example-bids', 'datalad_dirty': False, 'datalad_commit_id': 'b87897cbe51bf0ee5514becaa5c7dd76491db5ad', 'datalad_id': '8fddff30-6993-420a-9d1e-b5b028c59468'}, 'dependencies': set(), 'element': {'subject': 'sub-01'}}}}
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 6.929 seconds)
**Total running time of the script:** (0 minutes 6.951 seconds)


.. _sphx_glr_download_auto_examples_run_datagrabber_bids_datalad.py:
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