fix: use a numpy squeeze to take care of parcellation ndim when warpe… #989
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| name: Build and publish docs | |
| on: | |
| push: | |
| # Sequence of patterns matched against refs/heads | |
| branches: | |
| - main | |
| # Sequence of patterns matched against refs/tags | |
| tags: | |
| - v* | |
| jobs: | |
| build-docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| with: | |
| # require all of history to see all tagged versions' docs | |
| fetch-depth: 0 | |
| submodules: true | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Check for sudo | |
| shell: bash | |
| run: | | |
| if type sudo >/dev/null 2>&1; then SUDO="sudo"; else SUDO=""; fi | |
| echo "SUDO=$SUDO" >> $GITHUB_ENV | |
| - name: Install dependencies | |
| run: | | |
| $SUDO bash -c "$(curl -fsSL http://neuro.debian.net/_files/neurodebian-travis.sh)" | |
| $SUDO apt-get update -qq | |
| $SUDO apt-get install git-annex-standalone | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install -e ".[docs,neurokit2]" | |
| python -m pip install git+https://github.com/dls-controls/sphinx-multiversion@only-arg | |
| - name: Configure git for datalad | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "GITHUB CI Runner" | |
| - name: Install ANTs | |
| run: | | |
| echo "++ Add universe repo" | |
| sudo add-apt-repository -y universe | |
| echo "++ Update package manager info" | |
| sudo apt-get update -qq | |
| echo "++ Downloading ANTs" | |
| curl -fsSL -o ants.zip https://github.com/ANTsX/ANTs/releases/download/v2.5.1/ants-2.5.1-ubuntu-22.04-X64-gcc.zip | |
| unzip ants.zip -d /opt | |
| mv /opt/ants-2.5.1/bin/* /opt/ants-2.5.1 | |
| rm ants.zip | |
| echo "/opt/ants-2.5.1" >> $GITHUB_PATH | |
| - name: Checkout gh-pages | |
| # As we already did a deploy of gh-pages above, it is guaranteed to be there | |
| # so check it out so we can selectively build docs below | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: gh-pages | |
| path: docs/_build | |
| - name: Build docs | |
| # Use the args we normally pass to sphinx-build, but run sphinx-multiversion | |
| run: | | |
| make -C docs/ html | |
| touch docs/_build/.nojekyll | |
| cp docs/redirect.html docs/_build/index.html | |
| - name: Publish docs to gh-pages | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs/_build | |
| keep_files: true |