ci: update FSL envvars in Dockerfile-ci #1044
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| name: Build and publish docs | |
| on: | |
| push: | |
| # Sequence of patterns matched against refs/heads | |
| branches: | |
| - main | |
| # Sequence of patterns matched against refs/tags | |
| tags: | |
| - v* | |
| workflow_dispatch: {} | |
| jobs: | |
| build-docs: | |
| runs-on: ubuntu-latest | |
| # Use custom docs CI image | |
| container: ghcr.io/juaml/junifer-docs:main | |
| steps: | |
| - name: Check ANTs | |
| run: | | |
| echo "Using ANTs : $(antsRegistration --version)" | |
| - name: Install system dependencies | |
| run: | | |
| # actions/checkout fails to identify Git as it's not in the CI image | |
| apt-get -qq update && \ | |
| apt-get -qq install -y \ | |
| git \ | |
| git-annex \ | |
| make \ | |
| jq | |
| # Copy xfms directory | |
| mkdir -p $HOME/junifer/data/xfms && \ | |
| cp -ar /root/junifer/data/xfms/. $HOME/junifer/data/xfms/ | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| with: | |
| # require all of history to see all tagged versions' docs | |
| fetch-depth: 0 | |
| submodules: true | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install -e ".[docs,neurokit2]" | |
| python -m pip install git+https://github.com/dls-controls/sphinx-multiversion@only-arg | |
| - name: Configure Git for DataLad | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "GitHub Runner" | |
| - name: Checkout gh-pages | |
| # As we already did a deploy of gh-pages above, it is guaranteed to be there | |
| # so check it out so we can selectively build docs below | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: gh-pages | |
| path: docs/_build | |
| - name: Build docs | |
| # Use the args we normally pass to sphinx-build, but run sphinx-multiversion | |
| run: | | |
| # https://github.com/actions/checkout/issues/1169#issuecomment-2291682583 | |
| git config --system --add safe.directory $(pwd) | |
| make -C docs/ html | |
| touch docs/_build/.nojekyll | |
| cp docs/redirect.html docs/_build/index.html | |
| - name: Publish docs to gh-pages | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs/_build | |
| keep_files: true |