FIJI Jython Scripting

Useful functions and snippets for FIJI scripting using Jython.

• useful_functions_fiji_jython.py: various functions using the ImageJ API and MorpholibJ API. Examples:
  • Reading files using Bioformats API
  • Getting measurements from label images using MorpholibJ API
• code folder: contains various fully developed scripts
• snippets folder: many code snippets to test functions during code development.