Name		Name	Last commit message	Last commit date
Latest commit History 265 Commits
algorithm_configs		algorithm_configs
docker		docker
experimental		experimental
functions		functions
plotting_scripts		plotting_scripts
upload_scripts		upload_scripts
.gitignore		.gitignore
Deconvolution_RNASeq.Rproj		Deconvolution_RNASeq.Rproj
Examine_ParamSets.R		Examine_ParamSets.R
Filenames.R		Filenames.R
Plot_Figures.R		Plot_Figures.R
Plot_Figures_TestData.R		Plot_Figures_TestData.R
README.md		README.md
Step00_InitialSetupInstall.R		Step00_InitialSetupInstall.R
Step01_Preprocess_ExternalMetadata.R		Step01_Preprocess_ExternalMetadata.R
Step02_Preprocess_RNASeqData.R		Step02_Preprocess_RNASeqData.R
Step02x_GetCovariates.R		Step02x_GetCovariates.R
Step03_CreateMappingReference.R		Step03_CreateMappingReference.R
Step04_MapDatasets.R		Step04_MapDatasets.R
Step05_GeneratePseudobulk.R		Step05_GeneratePseudobulk.R
Step06_FindMarkers.R		Step06_FindMarkers.R
Step07_CalculateSignatures.R		Step07_CalculateSignatures.R
Step08_RegressBulkData.R		Step08_RegressBulkData.R
Step08x_ExamineCovariates.R		Step08x_ExamineCovariates.R
Step09_RunDeconvolutionAlgorithms.R		Step09_RunDeconvolutionAlgorithms.R
Step10_GenerateBaselineData.R		Step10_GenerateBaselineData.R
Step11_CalculateErrors.R		Step11_CalculateErrors.R
Step12_Get_TopParamSets.R		Step12_Get_TopParamSets.R
Step13_RunDeconvolution_TopParameters.R		Step13_RunDeconvolution_TopParameters.R
SynapseDownload_RData.R		SynapseDownload_RData.R

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