Merge pull request #112 from stain/patch-2

More publications/posters for the README

CITATION.cff

@@ -18,7 +18,7 @@ cff-version: 1.2.0
 identifiers:
   - description: WfExS-backend release in Zenodo
     type: doi
-    value: "10.5281/zenodo.6567592"
+    value: "10.5281/zenodo.6567591"
 keywords:
   - workflows
   - ro-crate

README.md

@@ -29,11 +29,48 @@ and [cwltool](https://github.com/common-workflow-language/cwltool)).
 
 Additional present and future documentation is hosted at [development-docs](development-docs/index.md) subfolder, until it is migrated to a proper documentation service.
 
+##  Cite as
+
+José María Fernández, Laura Rodríguez-Navas, Adrián Muñoz-Cívico, Paula Iborra, Daniel Lea (2024):  
+**WfExS-backend**.  
+_Zenodo_  
+<https://doi.org/10.5281/zenodo.6567591>
+
+Visit the [Zenodo record](https://doi.org/10.5281/zenodo.6567591) for the latest versioned DOI and author list.
+
 ### Presentations and outreach
 
-Fernández JM, Rodríguez-Navas L and Capella-Gutiérrez S. Secured and annotated execution of workflows with WfExS-backend [version 1; not peer reviewed]. F1000Research 2022, 11:1318 (poster) (https://doi.org/10.7490/f1000research.1119198.1) 
+Paula Iborra, José M. Fernández, Salvador Capella-Gutierrez (2024):  
+[**Onboarding Snakemake: Progress towards WfExS-backend integration**](https://doi.org/10.7490/f1000research.1119725.1).  
+_F1000Research_ **13**(ELIXIR):551 (poster)  
+<https://doi.org/10.7490/f1000research.1119725.1>
+
+Eugenio Gonzalo1, Laia Codó, Jose María Fernandez, Stian Soiland-Reyes, Salvador Capella-Gutierrez, Emily Jefferson, Carole Goble, Tim Beck, Phil Quinlan, Tom Giles (2024):  
+[**Five safes workflow RO-Crate and WfExS**. Closing the gap of federated analysis and Trusted Research Enviroments (TREs) in the health data context](https://doi.org/10.7490/f1000research.1119724.1).  
+_F1000Research_ **13**(ELIXIR):550 (poster)  
+<https://doi.org/10.7490/f1000research.1119724.1>
+
+José M. Fernández, Paula Iborra, Sébastien Moretti, Arun Isaac, Paul De Geest, Stian Soiland-Reyes (2024):  
+[**BioHackEU23: FAIR Workflow Execution with WfExS and Workflow Run Crate**](https://doi.org/10.37044/osf.io/7f94w).  
+_BioHackrXiv_  
+<https://doi.org/10.37044/osf.io/7f94w>
 
-Laura Rodríguez-Navas (2021): 
+Simone Leo, Michael R. Crusoe, Laura Rodríguez-Navas, Raül Sirvent, Alexander Kanitz, Paul De Geest, Rudolf Wittner, Luca Pireddu, Daniel Garijo, José M. Fernández, Iacopo Colonnelli, Matej Gallo, Tazro Ohta, Hirotaka Suetake, Salvador Capella-Gutierrez, Renske de Wit, Bruno de Paula Kinoshita, Stian Soiland-Reyes (2024):  
+[**Recording provenance of workflow runs with RO-Crate**](https://doi.org/10.48550/arXiv.2312.07852).  
+_arXiv_:2312.07852  
+<https://doi.org/10.48550/arXiv.2312.07852>
+
+José M. Fernández1, Laura Rodriguez-Navas, Salvador Capella-Gutiérrez (2023):  
+[**WfExS-backend in the WRROC world**?](https://doi.org/10.7490/f1000research.1119457.1)  
+_F1000Research_ **12**(ELIXIR):616 (poster)
+<https://doi.org/10.7490/f1000research.1119457.1>
+
+Fernández JM, Rodríguez-Navas L and Capella-Gutiérrez S.  
+[**Secured and annotated execution of workflows with WfExS-backend**](https://doi.org/10.7490/f1000research.1119198.1) [version 1; not peer reviewed].  
+_F1000Research_ 2022, 11:1318 (poster)  
+<https://doi.org/10.7490/f1000research.1119198.1>
+
+Laura Rodríguez-Navas (2021):  
 [**WfExS: a software component to enable the use of RO-Crate in the EOSC-Life collaboratory**](https://osf.io/tb5ku/).  
 _FAIR Digital Object Forum_, [CWFR & FDO SEM meeting](https://osf.io/v8xjz/), 2021-07-02
 [[video recording](https://osf.io/wna42/)], [[slides](https://osf.io/tb5ku/)]
@@ -42,7 +79,7 @@ Laura Rodríguez-Navas (2021):
 [**WfExS: a software component to enable the use of RO-Crate in the EOSC-Life tools collaboratory**](https://repository.eoscsecretariat.eu/index.php/s/ERebmpJcyjFRqcx/download?path=%2F17%20June%2F1400%20-%20Technical%20challenges%20on%20EOSC%2FBreakout%203%20-%20Interoperability%20challenges%20for%20thematic%20communities&files=05%20-%20Laura%20Rodr%C3%ADguez-Navas%20-%20WfExS.pdf&downloadStartSecret=zwwx23xrow).  
 _[EOSC Symposium 2021](https://www.eoscsecretariat.eu/eosc-symposium-2021-programme)_, 2021-06-17
 [[video recording](https://youtu.be/x5lLEym-gug?list=PLbISfqJh3Tstmx6CgrBmYI7lyyVXiY5VE&t=3238)]
-[[slides](https://drive.google.com/file/d/1LJkmI_gyl9VnuQ2_ZHBGeFkt_QTWFieg/view)
+[[slides](https://drive.google.com/file/d/1LJkmI_gyl9VnuQ2_ZHBGeFkt_QTWFieg/view)]
 
 Salvador Capella-Gutierrez (2021):  
 [**Demonstrator 7: Accessing human sensitive data from analytical workflows available to everyone in EOSC-Life**](https://www.eosc-life.eu/d7/)  
@@ -55,6 +92,11 @@ Bietrix, Florence; Carazo, José Maria; Capella-Gutierrez, Salvador; Coppens, Fr
 EOSC-Life deliverable D8.1, _Zenodo_
 <https://doi.org/10.5281/zenodo.4705078>
 
+## Example RO-Crate outputs
+
+* <https://doi.org/10.5281/zenodo.12588049> -- execution of [WOMBAT-Pipelines](https://github.com/wombat-p/WOMBAT-Pipelines) Nextflow workflow
+* <https://doi.org/10.5281/zenodo.12622362> -- execution of [Wetlab2Variations](https://github.com/inab/Wetlab2Variations/) CWL workflow
+
 
 ## WfExS-backend Usage