fix data 24 Aug

hodcroftlab · Aug 24, 2024 · 877b47c · 877b47c
1 parent e4fbf81
commit 877b47c
Show file tree

Hide file tree

Showing 20 changed files with 20,761 additions and 17,275 deletions.
diff --git a/web/public/data/clusters.json b/web/public/data/clusters.json
@@ -15559,7 +15559,7 @@
         "T27810C"
       ],
       "type": "variant",
-      "use_pango": true,
+      "use_pango": false,
       "who_name": [
         "Omicron"
       ]
@@ -16558,7 +16558,7 @@
         "27810C"
       ],
       "type": "variant",
-      "use_pango": true,
+      "use_pango": false,
       "who_name": [
         "Omicron"
       ]
@@ -17563,7 +17563,7 @@
         "27810C"
       ],
       "type": "variant",
-      "use_pango": true,
+      "use_pango": false,
       "who_name": [
         "Omicron"
       ]

diff --git a/web/public/data/mutationCounts/20J.Gamma.V3.json b/web/public/data/mutationCounts/20J.Gamma.V3.json
@@ -1,6 +1,6 @@
 {
   "S": {
-    "total": 120330,
+    "total": 120334,
     "counts": [
       {
         "mut": "S:P681H",
@@ -20,7 +20,7 @@
       },
       {
         "mut": "S:Q675H",
-        "count": 1349
+        "count": 1350
       },
       {
         "mut": "S:L5F",
@@ -36,7 +36,7 @@
       },
       {
         "mut": "S:E661D",
-        "count": 938
+        "count": 939
       },
       {
         "mut": "S:D427N",
@@ -45,11 +45,11 @@
     ]
   },
   "others": {
-    "total": 120330,
+    "total": 120334,
     "counts": [
       {
         "mut": "ORF9b:Q77E",
-        "count": 119679
+        "count": 119683
       },
       {
         "mut": "ORF1a:S2947N",
@@ -81,7 +81,7 @@
       },
       {
         "mut": "ORF1a:T1820I",
-        "count": 2692
+        "count": 2693
       },
       {
         "mut": "N:D402Y",

diff --git a/web/public/data/mutationCounts/21A.Delta.json b/web/public/data/mutationCounts/21A.Delta.json
@@ -1,91 +1,91 @@
 {
   "S": {
-    "total": 4470036,
+    "total": 4472870,
     "counts": [
       {
         "mut": "S:T95I",
-        "count": 1838717
+        "count": 1838586
       },
       {
         "mut": "S:A222V",
-        "count": 428866
+        "count": 428865
       },
       {
         "mut": "S:V127F",
-        "count": 359205
+        "count": 362429
       },
       {
         "mut": "S:H69-",
-        "count": 334832
+        "count": 337801
       },
       {
         "mut": "S:V70-",
-        "count": 333948
+        "count": 336921
       },
       {
         "mut": "S:Y144-",
-        "count": 319911
+        "count": 322743
       },
       {
         "mut": "S:L216F",
-        "count": 319337
+        "count": 322197
       },
       {
         "mut": "S:F157S",
-        "count": 318105
+        "count": 321003
       },
       {
         "mut": "S:A264D",
-        "count": 314659
+        "count": 317516
       },
       {
         "mut": "S:V213G",
-        "count": 314251
+        "count": 317098
       }
     ]
   },
   "others": {
-    "total": 4470036,
+    "total": 4472870,
     "counts": [
       {
         "mut": "ORF1a:T3255I",
-        "count": 4068771
+        "count": 4071600
       },
       {
         "mut": "ORF1a:V2930L",
-        "count": 3763538
+        "count": 3763528
       },
       {
         "mut": "ORF1b:A1918V",
-        "count": 3762713
+        "count": 3762706
       },
       {
         "mut": "ORF1a:P2046L",
-        "count": 3758837
+        "count": 3758796
       },
       {
         "mut": "ORF1a:T3646A",
-        "count": 3758179
+        "count": 3758175
       },
       {
         "mut": "ORF1a:P2287S",
-        "count": 3749685
+        "count": 3749652
       },
       {
         "mut": "N:G215C",
-        "count": 3748798
+        "count": 3748786
       },
       {
         "mut": "ORF1a:A1306S",
-        "count": 3741097
+        "count": 3741092
       },
       {
         "mut": "ORF7b:T40I",
-        "count": 3735606
+        "count": 3735585
       },
       {
         "mut": "ORF1a:A2529V",
-        "count": 1003572
+        "count": 1003571
       }
     ]
   }

diff --git a/web/public/data/mutationCounts/21K.Omicron.json b/web/public/data/mutationCounts/21K.Omicron.json
@@ -1,91 +1,91 @@
 {
   "S": {
-    "total": 2685636,
+    "total": 2688807,
     "counts": [
       {
         "mut": "S:R346K",
-        "count": 1260144
+        "count": 1260083
       },
       {
         "mut": "S:N460K",
-        "count": 414152
+        "count": 417836
       },
       {
         "mut": "S:N450D",
-        "count": 411513
+        "count": 415174
       },
       {
         "mut": "S:L452W",
-        "count": 410395
+        "count": 414061
       },
       {
         "mut": "S:V445H",
-        "count": 408824
+        "count": 412385
       },
       {
         "mut": "S:R408S",
-        "count": 405974
+        "count": 409726
       },
       {
         "mut": "S:L455S",
-        "count": 384972
+        "count": 388618
       },
       {
         "mut": "S:S371F",
-        "count": 375708
+        "count": 379172
       },
       {
         "mut": "S:V213G",
-        "count": 375379
+        "count": 378717
       },
       {
         "mut": "S:T376A",
-        "count": 370933
+        "count": 374375
       }
     ]
   },
   "others": {
-    "total": 2685636,
+    "total": 2688807,
     "counts": [
       {
         "mut": "ORF1b:T2163I",
-        "count": 342183
+        "count": 345403
       },
       {
         "mut": "ORF6:D61L",
-        "count": 341705
+        "count": 344873
       },
       {
         "mut": "ORF3a:T223I",
-        "count": 340161
+        "count": 343338
       },
       {
         "mut": "M:D3H",
-        "count": 338425
+        "count": 341702
       },
       {
         "mut": "ORF1b:R1315C",
-        "count": 337867
+        "count": 341038
       },
       {
         "mut": "N:S413R",
-        "count": 336753
+        "count": 339918
       },
       {
         "mut": "ORF1a:L3027F",
-        "count": 335508
+        "count": 338685
       },
       {
         "mut": "ORF1a:T4175I",
-        "count": 332064
+        "count": 335215
       },
       {
         "mut": "ORF1a:G1307S",
-        "count": 330354
+        "count": 333517
       },
       {
         "mut": "ORF1a:T3090I",
-        "count": 330313
+        "count": 333469
       }
     ]
   }