Sofair first commit

.gitignore

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+config/setup.py
+config/__pycache__/
+pygeoapi/
+config/manager/
+config/static/tmp/
+config/script/__pycache__/
+config/process/__pycache__/
+config/process/manager/__pycache__/

README.md

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+# SOFAIR - Sensor Observations to FAIR data
+
+![SOFAIR logo](https://raw.githubusercontent.com/geosas/sofair/main/docs/images/sofair-logo.png)
+
+The SOFAIR project is an interoperable middleware designed to promote and develop the OGC SensorThings standard.  It takes the form of an OGC API-compliant service integrating various functions to simplify, automate and guide the FAIRisation of temporal data. The processes are :
+* Creation of a new SensorThings instance,
+* Methods for configuring this instance,
+* Various functions to automate or simplify the supply of data to the service,
+* Connecting this service to Spatial Data Infrastructures (SDI) in terms of metadata and geographic layers,
+* Automatic generation of permalinks to viewers for displaying data from this service in cartographic or time-based portals.
+*
+![OGC Compliant](https://github.com/geosas/sofair/blob/main/docs/images/ogc-logo.png)
+
+## SOFAIR middleware sofair is at the heart of an ecosystem of services and communicates with various external interoperable modules
+
+![SOFAIR logo](https://raw.githubusercontent.com/geosas/sofair/main/docs/images/sofair-service.png)
+
+### [geOrchestra](https://www.georchestra.org/)
+Free, modular and interoperable Spatial Data Infrastructure providing Geoserver ans Geonetwork.
+
+### [FROST Server](https://www.iosb.fraunhofer.de/en/projects-and-products/frost-server.html)
+Open source implementation of OGC SensorThings API.
+
+### [STEAN](https://www.iosb.fraunhofer.de/en/projects-and-products/frost-server.html)
+Another open source implementation of OGC SensorThings API based on NodeJS
+
+### [mviewer](https://mviewer.netlify.app/fr/)
+Mapping portal with SensorThings extension.
+
+## SOFAIR provides free, independant and interoperable modules
+
+### [pygeoapi](https:/pygeoapi.io)
+Python server implementation of the OGC API suite of standards.
+
+### [Swagger](https:/swagger.io)
+Framework for generating documentation for Web APIs, based on an open source implementation of the OpenAPI specification.
+
+### [Bulma](https://bulma.io/)
+free, open source framework that provides ready-to-use frontend components that you can easily combine to build responsive web interfaces
+
+## SOFAIR portal
+![SOFAIR portal snapshot](https://raw.githubusercontent.com/geosas/sofair/main/docs/images/sofair-viewer.png)

config/data/sensorthings-metadata-iso19139.json

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+{
+  "layerName": "{{layerName}}",
+  "layerNameIds" : "{{layerNameIds}}",
+  "layerType": "postgis",
+  "schemaName": "sensorthings",
+  "layerNameDb": "{{layerNameDb}}",
+  "theGeomName": "geometry",
+  "dataType": "quanti",
+  "workspace": "sensorthings",
+  "storeIds": "sensorthings_store",
+  "layerTitle": "{{layerTitle}}",
+  "nativeCrs": 4326,
+  "metadata" : {
+    "uuid": "{{uuid}}",
+    "metadataTitle": "{{metadataTitle}}",
+    "creationDate": "{{creationDate}}",
+    "abstract": "{{abstract}}",
+    "lineage": "Cette couche a été générée automatiquement à partir du service OGC SensorThings {{url_sta}}",
+    "spatialRepresentationType": "vector",
+    "spatialResolution": 10000,
+    "legalUseLimitation": null,
+    "accessConstraint": null,
+    "useConstraint": "Usage libre sous réserve des mentions obligatoires sur tout docume nt de diffusion : Source : UMR 1069 SAS INRAE - Institut Agro",
+    "otherConstraint": "Pas de restriction d’accès public",
+    "uniqueIdentifier": null,
+    "licence": "La licence qui s'applique pour la réutilisation de cette carte est la « Licence Ouverte / Open License » Etalab, version 2.0",
+"licenceUrl": "https://www.etalab.gouv.fr/wp-content/uploads/2017/04/ETALAB-Licence-Ouverte-v2.0.pdf",
+    "onlineResources": [
+      {
+        "resourceURL": "-",
+        "resourceProtocol": "OGC:WMS",
+        "resourceName": "{{layerNameIds}}",
+        "resourceDescription": "",
+        "ordre": 1
+      },
+      {
+        "resourceURL": "{{url_sta}}",
+        "resourceProtocol": "WWW:LINK-1.0-http--link",
+        "resourceName": "Service SensorThings",
+        "resourceDescription": "Service OGC SensorTings The resource description",
+        "ordre": 2
+      }
+    ],
+    "author": [
+      {
+        "author": "{{author}}",
+        "affiliation": "INRAE, Institut Agro, SAS, 35042, Rennes, France"
+      }
+    ],
+    "inspireTheme": "Installations de suivi environnemental",
+    "keywords": [
+      {
+        "keyword": "données ouvertes",
+        "keywordtype": "theme"
+      },
+      {
+        "keyword": "série temporelle",
+        "keywordtype": "theme"
+      }
+    ],
+    "resourcePoc": {
+      "organisationName": "UMR 1069 SAS INRAE - Institut Agro",
+      "deliveryPoint": "65 rue de Saint-Brieuc",
+      "city": "Rennes",
+      "postalCode": "35042",
+      "country": "France",
+      "electronicMailAddress": "[email protected]"
+    }
+  }
+}

config/how_to.txt

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+#install pygeoapi
+
+python3 -m venv pygeoapi
+cd pygeoapi
+. bin/activate
+git clone https://github.com/geopython/pygeoapi.git
+cd pygeoapi
+pip3 install -r requirements.txt
+python3 setup.py install
+
+#install sofair
+########################
+which pip
+pip install -r requirements.txt
+
+
+#activate sofair
+#############################
+
+rm -R /usr/local/sofair-dev/pygeoapi/lib/python3.7/site-packages/pygeoapi-0.16.dev0-py3.7.egg/pygeoapi/process 
+rm /usr/local/sofair-dev/pygeoapi/lib/python3.7/site-packages/pygeoapi-0.16.dev0-py3.7.egg/pygeoapi/plugin.py 
+
+
+ln -s /usr/local/sofair-dev/config/plugin.py /usr/local/sofair-dev/pygeoapi/lib/python3.7/site-packages/pygeoapi-0.16.dev0-py3.7.egg/pygeoapi/plugin.py
+ln -s /usr/local/sofair-dev/config/process /usr/local/sofair-dev/pygeoapi/lib/python3.7/site-packages/pygeoapi-0.16.dev0-py3.7.egg/pygeoapi/process
+
+mkdir /usr/local/sofair-dev/config/static/tmp
+
+source /usr/local/sofair-dev/pygeoapi/bin/activate
+export PYGEOAPI_CONFIG=/usr/local/sofair-dev/config/sofair-config.yml
+export PYGEOAPI_OPENAPI=/usr/local/sofair-dev/config/sofair-openapi.yml
+
+pygeoapi openapi generate $PYGEOAPI_CONFIG > $PYGEOAPI_OPENAPI