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15 Open 21 Closed
15 Open 21 Closed
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Issues list

Blank FAILURE_REASONs
#64 opened May 15, 2024 by Chelsea-Na
vcf2maf not converting missing AD values to 0
#58 opened Sep 11, 2023 by edoyango
Variant annotation failing
#57 opened Aug 8, 2023 by Chelsea-Na
1
Improve tumor vs normal sample recognition in a vcf file
#47 opened Sep 20, 2022 by ruslan-forostianov
4
java.net.UnknownServiceException
#44 opened Jun 7, 2021 by marianakhoul
Several annotations show up as MUTATED in GENIE bug Something isn't working
#43 opened Apr 28, 2021 by inodb
2 tasks
@inodb
3
Add minimal example to repo for testing
#40 opened Mar 25, 2021 by inodb
Fail early on incorrect variants
#38 opened Mar 25, 2021 by inodb
Missing gnomAD values for particular variant
#37 opened Mar 25, 2021 by thomasyu888
@leexgh
3
Genome Nexus sometimes annotates SNV as ONP genome nexus annotation suite genome nexus server help wanted Extra attention is needed
#33 opened Jan 16, 2021 by thomasyu888
@sheridancbio
4
Genome Nexus sometimes annotates SNV as DNP genome nexus annotation suite genome nexus server help wanted Extra attention is needed
#32 opened Jan 16, 2021 by thomasyu888
@sheridancbio
5
Genome Nexus creates variants with Reference_Allele == Tumor_Seq_Allele2 == Tumor_Seq_Allele1 genome nexus annotation suite help wanted Extra attention is needed
#31 opened Jan 16, 2021 by thomasyu888
@sheridancbio
8
Report logs/warnings/errors encountered during MAF standardization run enhancement New feature or request
#23 opened Jul 24, 2020 by ao508
java.lang.OutOfMemoryError: Java heap space error documentation Improvements or additions to documentation
#3 opened Apr 27, 2020 by thomasyu888
8
Beneficial to merge all processed vcfs into one prior to annotating?
#2 opened Apr 27, 2020 by thomasyu888
3
ProTip! Follow long discussions with comments:>50.