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expected to fail
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hexylena committed Oct 18, 2024
1 parent c67d447 commit 19e8ee1
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions tools/abritamr/abritamr.xml
Original file line number Diff line number Diff line change
Expand Up @@ -64,10 +64,11 @@ ${i.element_identifier} ${i}
<test expect_num_outputs="5">
<param name="contig" value="CP009102.1.fasta" />
<param name="log_file" value="true" />
<output name="virulence_summary" ftype="txt">
<output name="virulence_summary" ftype="tabular">
<assert_contents>
<has_n_lines n="2"/>
<has_text text="sinH"/>
<has_n_columns n="2"/>
</assert_contents>
</output>
</test>
Expand All @@ -77,10 +78,11 @@ ${i.element_identifier} ${i}
<param name="species" value="Salmonella" />
<param name="identity" value="0.9" />
<param name="log_file" value="false" />
<output name="virulence_summary" ftype="txt">
<output name="virulence_summary" ftype="tabular">
<assert_contents>
<has_n_lines n="3"/>
<has_text text="NC_003198.1_1kb.fasta"/>
<has_n_columns n="2"/>
</assert_contents>
</output>
</test>
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