fix collapsed label handling (freesurfer/freesurfer commit db3bdc7) #71
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| name: Windows Build | |
| on: | |
| push: | |
| branches: [ dev ] | |
| tags: | |
| - v* | |
| pull_request: | |
| branches: [ dev ] | |
| jobs: | |
| build: | |
| runs-on: windows-2019 | |
| if: ${{ startsWith(github.ref, 'refs/tags') || !contains(github.event.head_commit.message, '[skip ci]') }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Checkout submodules | |
| run: | | |
| git submodule init | |
| git submodule update | |
| - name: Build zlib | |
| run: | | |
| git clone https://github.com/madler/zlib.git | |
| md zlib-build | |
| cd zlib-build | |
| cmake ..\zlib -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX="..\zlib-install" | |
| cmake --build . --config Release --target install | |
| cd .. | |
| dir | |
| - name: Build ITK | |
| run: | | |
| md ITK-build | |
| cd ITK-build | |
| cmake.exe -G "Visual Studio 16 2019" -DBUILD_SHARED_LIBS=OFF -DBUILD_TESTING=OFF -DBUILD_EXAMPLES=OFF -DCMAKE_BUILD_TYPE=Release ..\ITK | |
| cmake --build . --config Release --target Install | |
| cd .. | |
| shell: cmd | |
| - name: Build and test samseg python 3.8 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.8' | |
| architecture: 'x64' | |
| - run: | | |
| python -m pip wheel . -w .\dist --no-deps | |
| python -m pip install . -f .\dist\ | |
| #python -m pip install -r requirements.txt | |
| #python -m pip install pytest | |
| #python -m pip install tensorflow | |
| cd .. | |
| python -c 'import samseg' | |
| #python -m pytest samseg\samseg\tests | |
| rm samseg\gems\*.pyd | |
| rm samseg\samseg\gems\Release\*.pyd | |
| env: | |
| ZLIB_INCLUDE_DIR: .\zlib-install\include | |
| ZLIB_LIBRARY: .\zlib-install\lib\zlibstatic.lib | |
| - name: Build and test samseg python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.9' | |
| architecture: 'x64' | |
| - run: | | |
| python -m pip wheel . -w .\dist --no-deps | |
| python -m pip install . -f .\dist\ | |
| #python -m pip install -r requirements.txt | |
| #python -m pip install pytest | |
| #python -m pip install tensorflow | |
| cd .. | |
| python -c 'import samseg' | |
| #python -m pytest samseg\samseg\tests | |
| rm samseg\gems\*.pyd | |
| rm samseg\samseg\gems\Release\*.pyd | |
| env: | |
| ZLIB_INCLUDE_DIR: .\zlib-install\include | |
| ZLIB_LIBRARY: .\zlib-install\lib\zlibstatic.lib | |
| - name: Build and test samseg python 3.10 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| architecture: 'x64' | |
| - run: | | |
| python -m pip wheel . -w .\dist --no-deps | |
| python -m pip install . -f .\dist\ | |
| #python -m pip install -r requirements.txt | |
| #python -m pip install pytest | |
| #python -m pip install tensorflow | |
| cd .. | |
| python -c 'import samseg' | |
| #python -m pytest samseg\samseg\tests | |
| rm samseg\gems\*.pyd | |
| rm samseg\samseg\gems\Release\*.pyd | |
| env: | |
| ZLIB_INCLUDE_DIR: .\zlib-install\include | |
| ZLIB_LIBRARY: .\zlib-install\lib\zlibstatic.lib | |
| - name: Build and test samseg python 3.11 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.11' | |
| architecture: 'x64' | |
| - run: | | |
| python -m pip wheel . -w .\dist --no-deps | |
| python -m pip install . -f .\dist\ | |
| #python -m pip install -r requirements.txt | |
| #python -m pip install pytest | |
| #python -m pip install tensorflow | |
| cd .. | |
| python -c 'import samseg' | |
| #python -m pytest samseg\samseg\tests | |
| rm samseg\gems\*.pyd | |
| rm samseg\samseg\gems\Release\*.pyd | |
| env: | |
| ZLIB_INCLUDE_DIR: .\zlib-install\include | |
| ZLIB_LIBRARY: .\zlib-install\lib\zlibstatic.lib | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: windows-wheels | |
| path: .\dist\*.whl | |
| - name: Upload to PyPI | |
| if: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags') }} | |
| run: | | |
| python -m pip install twine | |
| python -m twine upload .\dist\*.whl -u __token__ -p "$env:PASSWORD" | |
| env: | |
| PASSWORD: ${{ secrets.PYPI_TOKEN }} |