fetch everything #151
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: MacOS Build | |
| on: | |
| push: | |
| branches: [ dev, itk_update ] | |
| tags: | |
| - v* | |
| pull_request: | |
| branches: [ dev ] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| name: Build and upload artefact | |
| strategy: | |
| # max-parallel: 1 | |
| matrix: | |
| os: [macos-latest, macos-13] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| # os: [macos-13] | |
| # python-version: ["3.10"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up python versions ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Detect if arm and set build variables | |
| if: runner.arch == 'ARM64' || runner.arch == 'ARM64' | |
| run: | | |
| APPLE="ON" | |
| echo "APPLE=${APPLE}" >> $GITHUB_ENV | |
| APPLE_ARM64="ON" | |
| echo "APPLE_ARM64=${APPLE_ARM64}" >> $GITHUB_ENV | |
| MACOSX_DEPLOYMENT_TARGET="14.0" | |
| echo "MACOSX_DEPLOYMENT_TARGET=${MACOSX_DEPLOYMENT_TARGET}" >> $GITHUB_ENV | |
| _PYTHON_HOST_PLATFORM="macosx-14.0-arm64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| ARCHFLAGS="-arch arm64" | |
| echo "ARCHFLAGS=${ARCHFLAGS=}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| CMAKE_OSX_ARCHITECTURES="arm64" | |
| echo "CMAKE_OSX_ARCHITECTURES=${CMAKE_OSX_ARCHITECTURES}" >> $GITHUB_ENV | |
| - name: Detect if x64 and set build variables | |
| if: runner.arch == 'x64' | |
| run: | | |
| APPLE="ON" | |
| echo "APPLE=${APPLE}" >> $GITHUB_ENV | |
| APPLE_ARM64="OFF" | |
| echo "APPLE_ARM64=${APPLE_ARM64}" >> $GITHUB_ENV | |
| MACOSX_DEPLOYMENT_TARGET="13.0" | |
| echo "MACOSX_DEPLOYMENT_TARGET=${MACOSX_DEPLOYMENT_TARGET}" >> $GITHUB_ENV | |
| _PYTHON_HOST_PLATFORM="macosx-13.0-x86_64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| ARCHFLAGS="-arch x86_64" | |
| echo "ARCHFLAGS=${ARCHFLAGS=}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| CMAKE_OSX_ARCHITECTURES="x86_64" | |
| echo "CMAKE_OSX_ARCHITECTURES=${CMAKE_OSX_ARCHITECTURES}" >> $GITHUB_ENV | |
| - name: Checkout submodules | |
| run: | | |
| git submodule init | |
| git submodule update | |
| - name: Build zlib | |
| run: | | |
| git clone https://github.com/madler/zlib.git | |
| mkdir zlib-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | |
| cd zlib-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | |
| cmake ../zlib -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=../zlib-install-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | |
| make install | |
| cd .. | |
| - name: Build ITK | |
| run: | | |
| mkdir ITK-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | |
| cd ITK-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=OFF \ | |
| -DBUILD_TESTING=OFF \ | |
| -DBUILD_EXAMPLES=OFF \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_INSTALL_PREFIX=../ITK-install-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} \ | |
| ../ITK | |
| make install | |
| cd .. | |
| - name: Build samseg for python version ${{ matrix.python-version }} and test | |
| run: | | |
| python -m pip wheel . -w ./dist-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} --no-deps --verbose | |
| env: | |
| ITK_DIR: ITK-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }} | |
| ZLIB_INCLUDE_DIR: zlib-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/include | |
| ZLIB_LIBRARY: zlib-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/lib/libz.a | |
| APPLE_ARM64: ${{ env.APPLE_ARM64 }} | |
| APPLE: ${{ env.APPLE }} | |
| MACOSX_DEPLOYMENT_TARGET: ${{ env.MACOSX_DEPLOYMENT_TARGET }} | |
| _PYTHON_HOST_PLATFORM: ${{ env._PYTHON_HOST_PLATFORM }} | |
| ARCHFLAGS: ${{ env.ARCHFLAGS }} | |
| CMAKE_OSX_ARCHITECTURES: ${{ env.CMAKE_OSX_ARCHITECTURES }} | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: macos-wheels-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }} | |
| path: dist-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/*.whl | |
| test: | |
| name: Test the wheel | |
| needs: build | |
| strategy: | |
| # max-parallel: 1 | |
| matrix: | |
| os: [macos-latest, macos-13] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| # os: [macos-13] | |
| # python-version: ["3.10"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Python - set up ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Detect if arm and set wheel variables | |
| if: runner.arch == 'ARM64' || runner.arch == 'ARM64' | |
| run: | | |
| _PYTHON_HOST_PLATFORM="macosx-14.0-arm64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| SAMSEG_TEST_PATH=${GITHUB_WORKSPACE}/samseg | |
| echo "SAMSEG_TEST_PATH=${SAMSEG_TEST_PATH}" >> $GITHUB_ENV | |
| - name: Detect if x64 and set build variables | |
| if: runner.arch == 'x64' | |
| run: | | |
| _PYTHON_HOST_PLATFORM="macosx-13.0-x86_64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| SAMSEG_TEST_PATH=${GITHUB_WORKSPACE}/samseg | |
| echo "SAMSEG_TEST_PATH=${SAMSEG_TEST_PATH}" >> $GITHUB_ENV | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: macos-wheels-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }} | |
| path: ${{ github.workspace }} | |
| - name: Install the wheel and test dependencies | |
| run: | | |
| python -m pip install samseg*.whl | |
| python -m pip install pytest | |
| python -m pip install tensorflow | |
| cd .. | |
| python -c "import samseg" | |
| python -m pytest --pyargs samseg.tests | |
| publish: | |
| name: Publish the wheel | |
| needs: test | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| os: [macos-latest, macos-13] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| if: startsWith(github.ref, 'refs/tags') | |
| steps: | |
| - name: Python - set up ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Detect if arm and set wheel variables | |
| if: runner.arch == 'ARM64' || runner.arch == 'ARM64' | |
| run: | | |
| _PYTHON_HOST_PLATFORM="macosx-14.0-arm64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| - name: Detect if x64 and set build variables | |
| if: runner.arch == 'x64' | |
| run: | | |
| _PYTHON_HOST_PLATFORM="macosx-13.0-x86_64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: macos-wheels-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }} | |
| path: ${{ github.workspace }} | |
| - name: Upload to PyPI | |
| run: | | |
| python -m pip install twine | |
| python -m twine upload *.whl -u __token__ -p "$PASSWORD" | |
| env: | |
| PASSWORD: ${{ secrets.PYPI_TOKEN }} |