bug syntax in CI #148
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| name: MacOS Build | |
| on: | |
| push: | |
| branches: [ dev, itk_update ] | |
| tags: | |
| - v* | |
| pull_request: | |
| branches: [ dev ] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| name: Build and upload artefact | |
| strategy: | |
| # max-parallel: 1 | |
| matrix: | |
| os: [macos-latest, macos-13] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| # os: [macos-13] | |
| # python-version: ["3.10"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-tags: true | |
| - name: Set up python versions ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Detect if arm and set build variables | |
| if: runner.arch == 'ARM64' || runner.arch == 'ARM64' | |
| run: | | |
| APPLE="ON" | |
| echo "APPLE=${APPLE}" >> $GITHUB_ENV | |
| APPLE_ARM64="ON" | |
| echo "APPLE_ARM64=${APPLE_ARM64}" >> $GITHUB_ENV | |
| MACOSX_DEPLOYMENT_TARGET="14.0" | |
| echo "MACOSX_DEPLOYMENT_TARGET=${MACOSX_DEPLOYMENT_TARGET}" >> $GITHUB_ENV | |
| _PYTHON_HOST_PLATFORM="macosx-14.0-arm64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| ARCHFLAGS="-arch arm64" | |
| echo "ARCHFLAGS=${ARCHFLAGS=}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| CMAKE_OSX_ARCHITECTURES="arm64" | |
| echo "CMAKE_OSX_ARCHITECTURES=${CMAKE_OSX_ARCHITECTURES}" >> $GITHUB_ENV | |
| - name: Detect if x64 and set build variables | |
| if: runner.arch == 'x64' | |
| run: | | |
| APPLE="ON" | |
| echo "APPLE=${APPLE}" >> $GITHUB_ENV | |
| APPLE_ARM64="OFF" | |
| echo "APPLE_ARM64=${APPLE_ARM64}" >> $GITHUB_ENV | |
| MACOSX_DEPLOYMENT_TARGET="13.0" | |
| echo "MACOSX_DEPLOYMENT_TARGET=${MACOSX_DEPLOYMENT_TARGET}" >> $GITHUB_ENV | |
| _PYTHON_HOST_PLATFORM="macosx-13.0-x86_64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| ARCHFLAGS="-arch x86_64" | |
| echo "ARCHFLAGS=${ARCHFLAGS=}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| CMAKE_OSX_ARCHITECTURES="x86_64" | |
| echo "CMAKE_OSX_ARCHITECTURES=${CMAKE_OSX_ARCHITECTURES}" >> $GITHUB_ENV | |
| - name: Checkout submodules | |
| run: | | |
| git submodule init | |
| git submodule update | |
| - name: Build zlib | |
| run: | | |
| git clone https://github.com/madler/zlib.git | |
| mkdir zlib-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | |
| cd zlib-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | |
| cmake ../zlib -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=../zlib-install-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | |
| make install | |
| cd .. | |
| - name: Build ITK | |
| run: | | |
| mkdir ITK-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | |
| cd ITK-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=OFF \ | |
| -DBUILD_TESTING=OFF \ | |
| -DBUILD_EXAMPLES=OFF \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_INSTALL_PREFIX=../ITK-install-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} \ | |
| ../ITK | |
| make install | |
| cd .. | |
| - name: Build samseg for python version ${{ matrix.python-version }} and test | |
| run: | | |
| python -m pip wheel . -w ./dist-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} --no-deps --verbose | |
| env: | |
| ITK_DIR: ITK-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }} | |
| ZLIB_INCLUDE_DIR: zlib-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/include | |
| ZLIB_LIBRARY: zlib-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/lib/libz.a | |
| APPLE_ARM64: ${{ env.APPLE_ARM64 }} | |
| APPLE: ${{ env.APPLE }} | |
| MACOSX_DEPLOYMENT_TARGET: ${{ env.MACOSX_DEPLOYMENT_TARGET }} | |
| _PYTHON_HOST_PLATFORM: ${{ env._PYTHON_HOST_PLATFORM }} | |
| ARCHFLAGS: ${{ env.ARCHFLAGS }} | |
| CMAKE_OSX_ARCHITECTURES: ${{ env.CMAKE_OSX_ARCHITECTURES }} | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: macos-wheels-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }} | |
| path: dist-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/*.whl | |
| test: | |
| name: Test the wheel | |
| needs: build | |
| strategy: | |
| # max-parallel: 1 | |
| matrix: | |
| os: [macos-latest, macos-13] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| # os: [macos-13] | |
| # python-version: ["3.10"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Python - set up ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Detect if arm and set wheel variables | |
| if: runner.arch == 'ARM64' || runner.arch == 'ARM64' | |
| run: | | |
| _PYTHON_HOST_PLATFORM="macosx-14.0-arm64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| SAMSEG_TEST_PATH=${GITHUB_WORKSPACE}/samseg | |
| echo "SAMSEG_TEST_PATH=${SAMSEG_TEST_PATH}" >> $GITHUB_ENV | |
| - name: Detect if x64 and set build variables | |
| if: runner.arch == 'x64' | |
| run: | | |
| _PYTHON_HOST_PLATFORM="macosx-13.0-x86_64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| SAMSEG_TEST_PATH=${GITHUB_WORKSPACE}/samseg | |
| echo "SAMSEG_TEST_PATH=${SAMSEG_TEST_PATH}" >> $GITHUB_ENV | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: macos-wheels-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }} | |
| path: ${{ github.workspace }} | |
| - name: Install the wheel and test dependencies | |
| run: | | |
| python -m pip install samseg*.whl | |
| python -m pip install pytest | |
| python -m pip install tensorflow | |
| cd .. | |
| python -c "import samseg" | |
| python -m pytest --pyargs samseg.tests | |
| publish: | |
| name: Publish the wheel | |
| needs: test | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| os: [macos-latest, macos-13] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| if: startsWith(github.ref, 'refs/tags') | |
| steps: | |
| - name: Python - set up ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Detect if arm and set wheel variables | |
| if: runner.arch == 'ARM64' || runner.arch == 'ARM64' | |
| run: | | |
| _PYTHON_HOST_PLATFORM="macosx-14.0-arm64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| - name: Detect if x64 and set build variables | |
| if: runner.arch == 'x64' | |
| run: | | |
| _PYTHON_HOST_PLATFORM="macosx-13.0-x86_64" | |
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | |
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: macos-wheels-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }} | |
| path: ${{ github.workspace }} | |
| - name: Upload to PyPI | |
| run: | | |
| python -m pip install twine | |
| python -m twine upload *.whl -u __token__ -p "$PASSWORD" | |
| env: | |
| PASSWORD: ${{ secrets.PYPI_TOKEN }} |