more yaml fixes #117
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| name: MacOS Build | ||
| on: | ||
| push: | ||
| branches: [ dev, itk_update ] | ||
| tags: | ||
| - v* | ||
| pull_request: | ||
| branches: [ dev ] | ||
| workflow_dispatch: | ||
| jobs: | ||
| build: | ||
| name: Build and upload artefact | ||
| strategy: | ||
| max-parallel: 1 | ||
| matrix: | ||
| os: [macos-latest, macos-13] | ||
| python-version: ["3.8", "3.9", "3.10", "3.11"] | ||
| runs-on: ${{ matrix.os }} | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v4 | ||
| - name: Set up python versions ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Detect if arm and set build variables | ||
| if: runner.arch == 'ARM64' || runner.arch == 'ARM64' | ||
| run: | | ||
| APPLE_ARM64=ON | ||
| echo "APPLE_ARM64=${APPLE_ARM64}" >> $GITHUB_ENV | ||
| MACOSX_DEPLOYMENT_TARGET="14.0" | ||
| echo "MACOSX_DEPLOYMENT_TARGET=${MACOSX_DEPLOYMENT_TARGET}" >> $GITHUB_ENV | ||
| _PYTHON_HOST_PLATFORM="macosx-14.0-arm64" | ||
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | ||
| ARCHFLAGS="-arch arm64" | ||
| echo "ARCHFLAGS=${ARCHFLAGS=}" >> $GITHUB_ENV | ||
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | ||
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | ||
| - name: Detect if x64 and set build variables | ||
| if: runner.arch == 'x64' | ||
| run: | | ||
| APPLE_ARM64=OFF | ||
| echo "APPLE_ARM64=${APPLE_ARM64}" >> $GITHUB_ENV | ||
| MACOSX_DEPLOYMENT_TARGET="13.0" | ||
| echo "MACOSX_DEPLOYMENT_TARGET=${MACOSX_DEPLOYMENT_TARGET}" >> $GITHUB_ENV | ||
| _PYTHON_HOST_PLATFORM="macosx-13.0-x86_64" | ||
| echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV | ||
| ARCHFLAGS="-arch x86_64" | ||
| echo "ARCHFLAGS=${ARCHFLAGS=}" >> $GITHUB_ENV | ||
| PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | ||
| echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV | ||
| - name: Checkout submodules | ||
| run: | | ||
| git submodule init | ||
| git submodule update | ||
| - name: Build zlib | ||
| run: | | ||
| git clone https://github.com/madler/zlib.git | ||
| mkdir zlib-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | ||
| cd zlib-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | ||
| cmake ../zlib -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=../zlib-install-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | ||
| make install | ||
| cd .. | ||
| - name: Build ITK | ||
| run: | | ||
| mkdir ITK-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | ||
| cd ITK-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} | ||
| cmake \ | ||
| -DBUILD_SHARED_LIBS=OFF \ | ||
| -DBUILD_TESTING=OFF \ | ||
| -DBUILD_EXAMPLES=OFF \ | ||
| -DCMAKE_BUILD_TYPE=Release \ | ||
| -DCMAKE_INSTALL_PREFIX=../ITK-install-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} \ | ||
| ../ITK | ||
| make install | ||
| cd .. | ||
| - name: Build samseg for python version ${{ matrix.python-version }} and test | ||
| run: | | ||
| python -m pip wheel . -w ./dist-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} --no-deps --verbose | ||
| env: | ||
| ITK_DIR: ITK-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }} | ||
| ZLIB_INCLUDE_DIR: zlib-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/include | ||
| ZLIB_LIBRARY: zlib-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/lib/libz.a | ||
| APPLE_ARM64: ${{ env.APPLE_ARM64 }} | ||
| MACOSX_DEPLOYMENT_TARGET: ${{ env.MACOSX_DEPLOYMENT_TARGET }} | ||
| _PYTHON_HOST_PLATFORM: ${{ env._PYTHON_HOST_PLATFORM }} | ||
| ARCHFLAGS: ${{ env.ARCHFLAGS }} | ||
| - name: Upload artifact | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: macos-wheels | ||
| path: dist-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/*.whl | ||
| test: | ||
| name: Test the wheel | ||
| needs: build | ||
| strategy: | ||
| max-parallel: 1 | ||
| matrix: | ||
| os: [macos-latest, macos-13] | ||
| python-version: ["3.8", "3.9", "3.10", "3.11"] | ||
| runs-on: ${{ matrix.os }} | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| - name: Download artifact | ||
| uses: actions/download-artifact@v4 | ||
| with: | ||
| name: macos-wheels | ||
| path: ${{ github.workspace }} | ||
| - name: Python - set up ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install the wheel and test dependencies | ||
| run: | | ||
| python -m pip install samseg*.whl | ||
| python -m pip install pytest | ||
| python -m pip install tensorflow | ||
| pytest tests -v | ||
| publish: | ||
| name: Publish the wheel | ||
| needs: test | ||
| runs-on: macos-latest | ||
| if: startsWith(github.ref, 'refs/tags') | ||
| steps: | ||
| - name: Download artifact | ||
| uses: actions/download-artifact@v4 | ||
| with: | ||
| name: macos-wheels | ||
| path: ${{ github.workspace }} | ||
| - name: Python - set up 3.10 | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: "3.10" | ||
| - name: Upload to PyPI | ||
| run: | | ||
| python -m pip install twine | ||
| python -m twine upload *.whl -u __token__ -p "$PASSWORD" | ||
| env: | ||
| PASSWORD: ${{ secrets.PYPI_TOKEN }} | ||
