Skip to content

Commit

Permalink
Update pages/your_domain/human_pathogen_genomics.md
Browse files Browse the repository at this point in the history
Co-authored-by: Marina Popleteeva <[email protected]>
  • Loading branch information
bianchini88 and marikapop authored Oct 23, 2024
1 parent 3a14ca3 commit ac5984c
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion pages/your_domain/human_pathogen_genomics.md
Original file line number Diff line number Diff line change
Expand Up @@ -112,7 +112,7 @@ While the objects of interest in this domain are pathogens, the data is usually
* Establish protocols and document the steps taken in the lab to process the sample and in the computational workflow to prepare the resulting data. Make sure to keep information from quality assurance procedures and strive to make your labwork and computational process as reproducible as possible.
* [High-Throughput Sequencing \| LifeScienceRDMLookUp](https://elixir.no/rdm-lookup/sequencing).
* The [Beyond 1 Million genomes project](https://b1mg-project.eu/) provides guidelines that cover the minimum quality requirements {% cite "gut2021B1MG" %} for the generation of genome sequencing data.
* Data repositories generally have information about recommended [data file formats](data_publication) and [metadata](metadata_management)
* Data repositories generally have information about recommended [data file formats](data_publication) and [metadata](metadata_management).
* The {% tool "fair-cookbook" %} provides instructions on [validation of file formats](https://faircookbook.elixir-europe.org/content/recipes/interoperability/fastq-file-format-validators.html)
* A good place to look for scientific and technical information about data quality validation software tools for pathogenomics is {% tool "bio-tools" %}.
* The {% tool "idtk" %} has a showcase on [An automated SARS-CoV-2 genome surveillance system built around Galaxy](https://www.infectious-diseases-toolkit.org/showcase/covid19-galaxy).
Expand Down

0 comments on commit ac5984c

Please sign in to comment.