Added the other four Tissue API methods

egonw · Nov 14, 2015 · c4012f6 · c4012f6
1 parent ff4295d
commit c4012f6
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Showing 2 changed files with 76 additions and 0 deletions.
diff --git a/src/main/java/com/github/egonw/ops4j/Tissues.java b/src/main/java/com/github/egonw/ops4j/Tissues.java
@@ -57,4 +57,32 @@ public String info(List<String> uris, Object... objects) throws ClientProtocolEx
 		return runRequest(server + "tissue/batch", params, objects);
 	}
 
+	public String forProteinCount(String uri, Object... objects) throws ClientProtocolException, IOException, HttpException {
+		Map<String,String> params = new HashMap<String,String>();
+		params.put("uri", uri);
+		return runRequest(server + "tissue/byProtein/count", params, objects);
+	}
+
+	public String forProteinList(String uri, int page, int pageSize, Object... objects) throws ClientProtocolException, IOException, HttpException {
+		Map<String,String> params = new HashMap<String,String>();
+		params.put("uri", uri);
+		params.put("_page", Integer.toString(page));
+		params.put("_pageSize", Integer.toString(pageSize));
+		return runRequest(server + "tissue/byProtein", params, objects);
+	}
+
+	public String getProteinCount(String uri, Object... objects) throws ClientProtocolException, IOException, HttpException {
+		Map<String,String> params = new HashMap<String,String>();
+		params.put("uri", uri);
+		return runRequest(server + "tissue/getProteins/count", params, objects);
+	}
+
+	public String getProteinList(String uri, int page, int pageSize, Object... objects) throws ClientProtocolException, IOException, HttpException {
+		Map<String,String> params = new HashMap<String,String>();
+		params.put("uri", uri);
+		params.put("_page", Integer.toString(page));
+		params.put("_pageSize", Integer.toString(pageSize));
+		return runRequest(server + "tissue/getProteins", params, objects);
+	}
+
 }
diff --git a/src/test/java/com/github/egonw/ops4j/TissuesTest.java b/src/test/java/com/github/egonw/ops4j/TissuesTest.java
@@ -58,4 +58,52 @@ public void infoBatch() throws ClientProtocolException, IOException, HttpExcepti
 		Assert.assertTrue(turtle.contains("ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo#TS-0171"));
 		Assert.assertTrue(turtle.contains("ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo#TS-0173"));
 	}
+
+	@Test
+	public void forProteinCount() throws ClientProtocolException, IOException, HttpException {
+		Tissues client = Tissues.getInstance(super.server, super.appID, super.appKey);
+		Assert.assertNotNull(client);
+		String turtle = client.forProteinCount("http://purl.uniprot.org/uniprot/P55795");
+		Assert.assertNotNull(turtle);
+		Assert.assertTrue(turtle.contains("prefix"));
+		Assert.assertTrue(turtle.contains("tissueExpressionTotalResults"));
+		Assert.assertFalse(turtle.contains(": 0,"));
+	}
+
+	@Test
+	public void forProteinList() throws ClientProtocolException, IOException, HttpException {
+		Tissues client = Tissues.getInstance(super.server, super.appID, super.appKey);
+		Assert.assertNotNull(client);
+		String turtle = client.forProteinList(
+			"http://purl.uniprot.org/uniprot/P55795",
+			1, 4
+		);
+		Assert.assertNotNull(turtle);
+		Assert.assertTrue(turtle.contains("prefix"));
+		Assert.assertTrue(turtle.contains("http://www.nextprot.org/db/search#NX_P55795"));
+	}
+
+	@Test
+	public void getProteinCount() throws ClientProtocolException, IOException, HttpException {
+		Tissues client = Tissues.getInstance(super.server, super.appID, super.appKey);
+		Assert.assertNotNull(client);
+		String turtle = client.getProteinCount("ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo#TS-0016");
+		Assert.assertNotNull(turtle);
+		Assert.assertTrue(turtle.contains("prefix"));
+		Assert.assertTrue(turtle.contains("tissueExpressionTotalResults"));
+		Assert.assertFalse(turtle.contains(": 0,"));
+	}
+
+	@Test
+	public void getProteinList() throws ClientProtocolException, IOException, HttpException {
+		Tissues client = Tissues.getInstance(super.server, super.appID, super.appKey);
+		Assert.assertNotNull(client);
+		String turtle = client.getProteinList(
+			"ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo#TS-0016",
+			1, 4
+		);
+		Assert.assertNotNull(turtle);
+		Assert.assertTrue(turtle.contains("prefix"));
+		Assert.assertTrue(turtle.contains("nextprot.org/"));
+	}
 }