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Releases: dcgerard/seqgendiff

v0.4.1

20 Jun 16:45
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seqgendiff 0.4.1

  • I added select_counts(), a function that will subsample the rows (genes)
    and columns (samples) of a RNA-seq count matrix. It is generally
    recommended that you do this subsampling each iteration of a simulation
    study so that your results do not depend on the specific structure of
    your data. The samples are just selected randomly. There are four different
    criteria for selecting the genes.
  • I also added citation information. This will be updated after I submit
    the manuscript to bioRxiv.

v0.4.0

17 Jun 15:57
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This is a major release. poisthin() is now defunct. The main functions are now thin_diff(), thin_2group(), thin_lib(), thin_gene(), and thin_all(). thin_diff() allows for general designs beyond the two-group model, and the rest of the functions are special cases of thin_diff().

v0.2.1

30 Apr 20:39
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Updates:

  • poisthin() now allows for unequal sample sizes between the two groups using the group_prop argument.
  • The argument name in group_assign has been changed from "half" to "frac" to represent the more general assignment options available.

v0.2.0

29 Mar 20:25
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Now allows for group assignment to be correlated with latent factors.