fix: minimizing unit #41
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| name: Docs | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "main" | |
| jobs: | |
| build_and_deploy_docs: | |
| name: Documentation Building and Deployment | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.REPO_TOKEN }} | |
| path: ufedmm | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| - uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| environment-file: ufedmm/devtools/conda-envs/test_env.yaml | |
| environment-name: docs | |
| channels: conda-forge | |
| extra-specs: | | |
| python=3.10 | |
| openmm=8.0 | |
| - name: Install package | |
| shell: bash -l {0} | |
| run: | | |
| cd ufedmm/ | |
| python -m pip install . --no-deps | |
| micromamba list | |
| - name: Build Documentation | |
| shell: bash -l {0} | |
| run: | | |
| cd ufedmm/ | |
| sphinx-build ./docs ./html | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| cd ufedmm/ | |
| pytest -v --cov=ufedmm --cov-report=term-missing --cov-report=html \ | |
| --pyargs --color=yes --doctest-modules ufedmm/ | |
| - name: Get coverage report | |
| id: coverage | |
| shell: bash -l {0} | |
| run: | | |
| cd ufedmm/ | |
| COVERAGE=$(coverage report | tail -1 | awk '{print $4}') | |
| OFFSET=$(((${COVERAGE::-1}-35)/6-1)) | |
| [[ $OFFSET < 0 ]] && OFFSET=0 | |
| PALETTE="000111222333" | |
| CODE=${PALETTE:$OFFSET:3} | |
| COLOR=$(echo $CODE | sed -e "s/0/red,/g; s/1/orange,/g; s/2/yellow,/g; s/3/green,/g; s/,$//") | |
| echo "coverage=${COVERAGE}" | tee -a "${GITHUB_OUTPUT}" | |
| echo "color=${COLOR}" | tee -a "${GITHUB_OUTPUT}" | |
| - name: Generate coverage badge | |
| uses: emibcn/[email protected] | |
| with: | |
| label: 'Coverage' | |
| label-color: 'black' | |
| status: ${{ steps.coverage.outputs.coverage }} | |
| color: ${{ steps.coverage.outputs.color }} | |
| path: 'ufedmm/htmlcov/coverage.svg' | |
| - name: Deploy documentation | |
| shell: bash -l {0} | |
| run: | | |
| if [ "$GITHUB_EVENT_NAME" == "pull_request" ]; then | |
| echo "Deployment is deactivated on pull requests" | |
| else | |
| cd ufedmm/ | |
| git reset --hard HEAD | |
| set -x | |
| echo "::group::Push page to gh-pages branch" | |
| git config user.name "$(git show --format=%an -s)" | |
| git config user.email "$(git show --format=%ae -s)" | |
| git fetch origin | |
| git switch gh-pages | |
| rsync -va --delete-excluded html/ docs/ | |
| rsync -va --delete-excluded htmlcov/ docs/coverage/ | |
| touch docs/.nojekyll | |
| git add -f docs/* | |
| git add -f docs/.nojekyll | |
| git add -f docs/coverage/* | |
| git commit -m "Docs from $GITHUB_REF $GITHUB_SHA" || echo "Branch is up to date" | |
| git push -f origin gh-pages | |
| echo "::endgroup::" | |
| fi |