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@covidestim

covidestim

Tools to estimate true incidence and Rt of SARS-CoV-2, along with daily nowcasts for all 50 states

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  1. covidestim covidestim Public

    Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States

    C++ 27 6

  2. dailyFlow dailyFlow Public

    Nextflow workflow for daily county/state runs

    Nextflow

  3. covid-dash covid-dash Public

    Forked from rtcovidlive/covid-dash

    Next.js/d3/React website displaying data from Covidestim model results

    HTML

Repositories

Showing 10 of 16 repositories
  • covidestim Public

    Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States

    covidestim/covidestim’s past year of commit activity
    C++ 27 6 7 0 Updated Sep 13, 2024
  • covidestim-sources Public

    Data pipeline for covidestim, + analysis of revisioning in public COVID data

    covidestim/covidestim-sources’s past year of commit activity
    R 3 0 0 0 Updated Apr 2, 2024
  • covid-dash Public Forked from rtcovidlive/covid-dash

    Next.js/d3/React website displaying data from Covidestim model results

    covidestim/covid-dash’s past year of commit activity
    HTML 0 23 0 0 Updated Mar 18, 2024
  • data-archive Public

    Repository with archived output data from analyses using covidestim model runs

    covidestim/data-archive’s past year of commit activity
    1 0 0 0 Updated Jul 19, 2023
  • dailyFlow Public

    Nextflow workflow for daily county/state runs

    covidestim/dailyFlow’s past year of commit activity
    Nextflow 0 0 0 0 Updated May 4, 2023
  • api_docs Public

    How to use our public API

    covidestim/api_docs’s past year of commit activity
    0 0 0 0 Updated Jul 27, 2022
  • webworker Public

    Container with scripts for taking model results and formatting them for public distribution

    covidestim/webworker’s past year of commit activity
    R 0 0 0 0 Updated Jul 23, 2022
  • dbstan Public

    Effortlessly move RStan results into/out of your database

    covidestim/dbstan’s past year of commit activity
    R 0 0 0 0 Updated Jul 8, 2022
  • vaccineAdjust Public

    R package for doing pre-model vaccine adjustment

    covidestim/vaccineAdjust’s past year of commit activity
    R 0 0 0 0 Updated Jun 28, 2022
  • omicron-testing Public
    covidestim/omicron-testing’s past year of commit activity
    R 0 0 0 0 Updated May 17, 2022
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