Software environment for CodeRefinery workshops

Environment for CodeRefinery workshops for Conda or Python virtual environments (this page is not usable without already knowing about Conda or virtual environments).

environment.yml for Conda

This requires installing and activating Anaconda or miniconda first. More information on Conda environments at its user guide.

$ conda env update -f environment.yml

requirements.txt for virtual environments

To install:

$ python -m venv coderefinery-venv/
$ source coderefinery-venv/bin/activate
$ pip install -r requirements.txt

To activate later:

$ source coderefinery-venv/bin/activate

Binder

This repository is suitable for the Binder service to create a software environment suitable for CodeRefinery lessons.

Note that after a few hours maximum (or a few hours of inactivity), all data is destroyed from here. This is a public service, so don't trust this with data security.

• Link: https://mybinder.org/v2/gh/coderefinery/software/main
• Link directly to terminal: https://mybinder.org/v2/gh/coderefinery/software/main?urlpath=terminals/1
• Link directly to JupyterLab: https://mybinder.org/v2/gh/coderefinery/software/main?urlpath=lab/
• Binder configuration for admins