update nt_delins_regex

cidgoh · Apr 29, 2024 · e18dfa9 · e18dfa9
1 parent 047f085
commit e18dfa9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/functions.py b/bin/functions.py
@@ -84,7 +84,7 @@ def add_hgvs_names(new_gvf):
     # for ins
     nt_ins_regex = "[a-z]\\.[0-9\\-_]+ins[A-Z]+"
     # for delins, eg. g.GCC10182_10184ACA
-    nt_delins_regex = "[a-z]\\.[A-Z]{2,}[0-9\\-_][A-Z]+" ##not quite right!
+    nt_delins_regex = "[a-z]\.[A-Z]+-?[0-9]+_-?[0-9]+[A-Z]+" 
 
     #df.loc[mask, 'val'] = df.loc[mask, 'val'].apply(f)
     # add hgvs nt snp names