reference_genome_maker

Python scripts to create reference genome files (e.g. Genbank) from various inputs (e.g. vcf)

Requirements

We use virtualenv.

$ virtualenv venv

$ source venv/bin/activate .

(venv) $ pip install -r requirements.txt

Do not modify requirements.txt by hand. After installing new requirements through pip, run:

(venv) $ pip freeze > requirements.txt

Testing

We use nose for testing. Running the following from the top-level directory should work:

(venv) $ nosetests