Change test is-not to is-nil?.

chrovis · Jul 4, 2023 · 79954bf · 79954bf
1 parent 8a5a80d
commit 79954bf
Showing 1 changed file with 14 additions and 14 deletions.
diff --git a/test/cljam/io/vcf/util/validator_test.clj b/test/cljam/io/vcf/util/validator_test.clj
@@ -9,7 +9,7 @@
 
 (deftest check-each-samples-test
   (testing "type check"
-    (is (not
+    (is (nil?
          (#'validator/check-each-samples
           {:normal {:DP 100}} [:normal]
           {:DP {:type "Integer" :number 1}})))
@@ -19,29 +19,29 @@
                     {:DP {:type "Integer" :number 1}})
                    [:normal :DP])
            ["Not match type declaration. Requires Integer , but [\"str100\"]."]))
-    (is (not
+    (is (nil?
          (#'validator/check-each-samples
           {:normal {:GT "1|0"}} [:normal]
           {:GT {:type "String" :number 1}})))
-    (is (not
+    (is (nil?
          (#'validator/check-each-samples
           {:normal {:A [1 2]}} [:normal]
           {:A {:type "Integer" :number 2}}))))
 
   (testing "number check"
-    (is (not
+    (is (nil?
          (#'validator/check-each-samples
           {:normal {:A [1 2]} :alt ["A" "T"]} [:normal]
           {:A {:type "Integer" :number 2}})))
-    (is (not
+    (is (nil?
          (#'validator/check-each-samples
           {:normal {:A [1 2]} :alt ["A" "T"]} [:normal]
           {:A {:type "Integer" :number "A"}})))
-    (is (not
+    (is (nil?
          (#'validator/check-each-samples
           {:normal {:A [1 2 3]} :alt ["A" "T"]} [:normal]
           {:A {:type "Integer" :number "R"}})))
-    (is (not
+    (is (nil?
          (#'validator/check-each-samples
           {:normal {:A [1 2 3 4 5 6]} :alt ["A" "T"]} [:normal]
           {:A {:type "Integer" :number "G"}})))
@@ -67,7 +67,7 @@
 
 (deftest invalid-variant?-test
   (testing "contig check"
-    (is (not
+    (is (nil?
          (validator/invalid-variant?
           {:chr "chr10" :pos 10}
           {:contig [{:id "chr10"}]}
@@ -94,32 +94,32 @@
            {:contig [{:id "chr10"}]}
            base-header))
          ["Must be sequence."]))
-    (is (not
+    (is (nil?
          (validator/invalid-variant?
           {:chr "chr10" :pos 10 :alt ["A" "<DEL>" nil]}
           {:contig [{:id "chr10"}]}
           base-header)))
-    (is (not
+    (is (nil?
          (validator/invalid-variant?
           {:chr "chr10" :pos 10 :alt ["G]17:198982]"
                                       "]13:123456]T"]}
           {:contig [{:id "chr10"}]}
           base-header))))
   (testing "qual check"
-    (is (not
+    (is (nil?
          (validator/invalid-variant?
           {:chr "chr10" :pos 10
            :qual 0.1}
           {:contig [{:id "chr10"}]}
           base-header))))
   (testing "filter check"
-    (is (not
+    (is (nil?
          (validator/invalid-variant?
           {:chr "chr10" :pos 10
            :filter :PASS}
           {:contig [{:id "chr10"}]}
           base-header)))
-    (is (not
+    (is (nil?
          (validator/invalid-variant?
           {:chr "chr10" :pos 10
            :filter [:q10 :s5]}
@@ -133,7 +133,7 @@
      {}
      base-header))
   (testing "format check"
-    (is (not
+    (is (nil?
          (validator/invalid-variant?
           {:chr "chr10" :pos 10
            :FORMAT ["A"]}