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1. CMU-SAFARI/RawHash CMU-SAFARI/RawHash Public

   RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et…

   C 47 5

2. CMU-SAFARI/BLEND CMU-SAFARI/BLEND Public

   BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important appl…

   C 42 4

3. CMU-SAFARI/Apollo CMU-SAFARI/Apollo Public

   Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Des…

   C++ 27 2

4. CMU-SAFARI/AirLift CMU-SAFARI/AirLift Public

   AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shared between the two reference genomes and enables remapping a…

   C 27 4

5. BilkentCompGen/hercules BilkentCompGen/hercules Public

   Profile HMM-based hybrid error correction algorithm for long reads

   C++ 20 4

6. calkan/reproducibility calkan/reproducibility Public

   sanity check scripts

   Shell