cleanup

cancervariants · Aug 8, 2023 · f4bf6c2 · f4bf6c2
1 parent 015001a
commit f4bf6c2
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/variation/validators/genomic_insertion.py b/variation/validators/genomic_insertion.py
@@ -49,7 +49,7 @@ async def get_valid_invalid_results(
  if ref:
  # gnomAD VCF provides reference, so we should validate this
  invalid_ref_msg = self.validate_reference_sequence(
- alt_ac, classification.pos0, classification.pos1 + len(ref) - 1, ref
+ alt_ac, classification.pos0, classification.pos1, ref
  )
  if invalid_ref_msg:
  errors.append(invalid_ref_msg)

diff --git a/variation/vrs_representation.py b/variation/vrs_representation.py
@@ -224,6 +224,7 @@ def to_vrs_allele(
  state = alt or ""
 
  if alt_type == AltType.SUBSTITUTION:
+ # This accounts for MNVs
  ival_end += len(state) - 1
 
  ival_start -= 1