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Readme formatting
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rajatkapoordfci committed Jul 23, 2024
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### Docker Setup

From the root directory , where Docker and docker-compose file are , run the following commands
From the root directory , where Docker and docker-compose file are , run the following commands:

*docker-compose up -d db
*docker-compose up -d uta
*docker-compose up -d dynamodb-local

Wait for all container to start , Db service which is seqrepo container takes time and exits once the sequence download is over.
Wait for all containers to start , Db service which is seqrepo container takes time and exits once the sequences download is over.

Before starting the Variation-normalizer service, check the following:

* Db container(seqrepo) has finished downloading data and has exited.
* UTA service logs has dispalyed the message " database system is ready to accept connections" in logs.
* Dynamodb container is up and running
* UTA service has dispalyed the message " database system is ready to accept connections" in logs.
* Dynamodb container is up and running.

Start the Variation Normalizer container with the following commnad:

Start the Variation Normalizer container with the following commnad:
docker-compose up -d app

The container will be up and running however , it downloads the gene normalizer data and that takes time. Please wait till the ETL for gene database is done. After that Variation normalizer is ready to use.

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