in silico deletion script: hound_isd_bed #43
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Description of your changes
Added new script hound_isd_bed.py analogous to the hound_ism_bed.py. The ISD script performs in silico deletions instead of in silico mutations.
Stitching is performed on reference to avoid doubling of the deleted sequence portion in the left and right shifts in alternative.
New arguments: "-s", dest="del_len" (Deletion size for ISD [Default: 1])
Type of change
(If applicable) How has this been tested?
Tested on the MPRA-deletion dataset (M Kircher, Nat Comm 2019) -- F9, HBG1 and LDLR gene promoters