New public study for CNF

[anngvu]

What?

Close #1981.

Cancer studies updated in this pull request:
New study for cutaneous neurofibroma cell line. Gene expression-only.

checks

For all pull requests:

• Passes validation

For a new study (in addition to above):

• Does study name and study ID follow our convention? e.g. Tumor_Type (Institue, Journal Year); brca_mskcc_2015
• is study meta data complete? e.g. pmid, group of PUBLIC
• were all samples profiled with WES/WGS? If not, is gene panel file curated?
• are oncotree codes of all samples curated; Cancer Type and Cancer Type Detailed needs to be added in addition to Oncotree Code
• clinical sample and patient data with meta files
• mutations data with meta files
• MAF is based on hg19
• MAF with 2 isoforms: uniprot and mskcc
• CNA data with meta files
• CNA segment data with meta files
• Expression data including z-scores with meta files
• Case-lists for all profiles.
• Manual checking (Niki or JJ): Triage or private Portal link here

[anngvu]

@ritikakundra This is a small and easy dataset. Hopefully I can ask a favor to have you take a look, though it looks like you guys are super busy.

[ritikakundra]

@anngvu I can look into them next week. But are they all expression data?

[anngvu]

Yep, though we *may* update one of the datasets with more later.

…

On Tue, Dec 19, 2023 at 11:18 AM ritikakundra ***@***.***> wrote: @anngvu <https://github.com/anngvu> I can look into them next week. But are they all expression data? — Reply to this email directly, view it on GitHub <#1983 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AHZ4M6TVOQDL5QK4E3CQNGLYKHK7HAVCNFSM6AAAAABAXGRHRSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQNRTGI3DQMJTGU> . You are receiving this because you were mentioned.Message ID: ***@***.***>