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New public study: Plexiforme Neurofibroma Serra NFOSI #1974

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New public study: Plexiforme Neurofibroma Serra NFOSI #1974

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0ada968
Add new study dataset
anngvu Dec 11, 2023
d5765c7
Add reference for new cancer type
anngvu Dec 15, 2023
5cda5ce
Remove html report
anngvu Dec 15, 2023
7d8350f
Merge branch 'master' into new/serra-pnf-nfosi
anngvu Dec 16, 2023
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1 change: 1 addition & 0 deletions public/pnf_serra_nfosi_2023/cancer_type.txt
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pnf Plexiforme Neurofibroma DarkOrchid nfib
3 changes: 3 additions & 0 deletions public/pnf_serra_nfosi_2023/data_clinical_patient.txt
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3 changes: 3 additions & 0 deletions public/pnf_serra_nfosi_2023/data_clinical_sample.txt
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3 changes: 3 additions & 0 deletions public/pnf_serra_nfosi_2023/data_expression_raw.txt
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3 changes: 3 additions & 0 deletions public/pnf_serra_nfosi_2023/data_expression_tpm.txt
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3 changes: 3 additions & 0 deletions public/pnf_serra_nfosi_2023/meta_cancer_type.txt
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genetic_alteration_type: CANCER_TYPE
datatype: CANCER_TYPE
data_filename: cancer_type.txt
4 changes: 4 additions & 0 deletions public/pnf_serra_nfosi_2023/meta_clinical_patient.txt
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cancer_study_identifier: pnf_serra_nfosi_2023
genetic_alteration_type: CLINICAL
datatype: PATIENT_ATTRIBUTES
data_filename: data_clinical_patient.txt
4 changes: 4 additions & 0 deletions public/pnf_serra_nfosi_2023/meta_clinical_sample.txt
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cancer_study_identifier: pnf_serra_nfosi_2023
genetic_alteration_type: CLINICAL
datatype: SAMPLE_ATTRIBUTES
data_filename: data_clinical_sample.txt
8 changes: 8 additions & 0 deletions public/pnf_serra_nfosi_2023/meta_expression_raw.txt
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cancer_study_identifier: pnf_serra_nfosi_2023
genetic_alteration_type: MRNA_EXPRESSION
datatype: CONTINUOUS
stable_id: rna_seq_mrna
show_profile_in_analysis_tab: true
profile_name: mRNA expression
profile_description: Expression levels
data_filename: data_expression_raw.txt
8 changes: 8 additions & 0 deletions public/pnf_serra_nfosi_2023/meta_expression_tpm.txt
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cancer_study_identifier: pnf_serra_nfosi_2023
genetic_alteration_type: MRNA_EXPRESSION
datatype: CONTINUOUS
stable_id: mrna_seq_tpm
show_profile_in_analysis_tab: true
profile_name: Normalized gene expression
profile_description: Normalized gene expression levels (TPM)
data_filename: data_expression_tpm.txt
8 changes: 8 additions & 0 deletions public/pnf_serra_nfosi_2023/meta_study.txt
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cancer_study_identifier: pnf_serra_nfosi_2023
type_of_cancer: pnf
name: 'Reprogramming Captures the Genetic and Tumorigenic Properties of Neurofibromatosis Type 1 Plexiform Neurofibromas'
description: Neurofibromatosis type 1 iPSCs gene expression profiling
citation: 'Carrió M et al. Reprogramming Captures the Genetic and Tumorigenic Properties of Neurofibromatosis Type 1 Plexiform Neurofibromas. Stem Cell Reports. doi: 10.1016/j.stemcr.2019.01.001.'
pmid: 30713041
groups: PUBLIC
add_global_case_list: true