add a cp_and_decompress script

broadinstitute · Dec 12, 2023 · 47575f4 · 47575f4
1 parent e1d81e0
commit 47575f4
Showing 1 changed file with 12 additions and 0 deletions.
diff --git a/scripts/cp_and_decompress.sh b/scripts/cp_and_decompress.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+INFILE=$1
+OUTFILE=$2
+
+if [[ $INFILE == *.gz ]]; then
+  pigz -dc $INFILE > $OUTFILE
+elif [[ $INFILE == *.zst ]]; then
+  zstd -d $INFILE -o $OUTFILE
+else
+  cp $INFILE $OUTFILE
+fi