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Add curation keyboard shortcuts #366

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merged 6 commits into from
Feb 7, 2024
Merged

Add curation keyboard shortcuts #366

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1e8f98f
Move qtpy functionality to brainglobe-utils
adamltyson Jan 16, 2024
fd83d3c
Prompt user before overwriting data
adamltyson Jan 16, 2024
7926e1e
Update use of brainglobe-utils functions
adamltyson Jan 16, 2024
93e16e2
Add keyboard shortcuts
adamltyson Jan 16, 2024
02d40c5
Merge branch 'main' into curation-shortcuts
adamltyson Feb 5, 2024
8e11aab
Merge branch 'main' into curation-shortcuts
willGraham01 Feb 7, 2024
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11 changes: 9 additions & 2 deletions cellfinder/napari/curation.py
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Original file line number Diff line number Diff line change
Expand Up @@ -70,6 +70,7 @@ def __init__(
self.output_directory: Optional[Path] = None

self.setup_main_layout()
self.setup_keybindings()

@self.viewer.layers.events.connect
def update_layer_list(v: napari.viewer.Viewer):
Expand Down Expand Up @@ -182,13 +183,15 @@ def add_loading_panel(self, row: int, column: int = 0):
self.load_data_layout,
self.mark_as_cell,
row=5,
tooltip="Mark all selected points as non cell. Shortcut: 'c'",
)
self.mark_as_non_cell_button = add_button(
"Mark as non cell(s)",
self.load_data_layout,
self.mark_as_non_cell,
row=5,
column=1,
tooltip="Mark all selected points as non cell. Shortcut: 'x'",
)
self.add_training_data_button = add_button(
"Add training data layers",
Expand All @@ -208,6 +211,10 @@ def add_loading_panel(self, row: int, column: int = 0):
self.load_data_panel.setVisible(True)
self.layout.addWidget(self.load_data_panel, row, column, 1, 1)

def setup_keybindings(self):
self.viewer.bind_key("c", self.mark_as_cell)
self.viewer.bind_key("x", self.mark_as_non_cell)

def set_signal_image(self):
"""
Set signal layer from current signal text box selection.
Expand Down Expand Up @@ -304,10 +311,10 @@ def _add_training_data_layers(self, cell_name: str, non_cell_name: str):
)
self.training_data_non_cell_choice.setCurrentText(non_cell_name)

def mark_as_cell(self):
def mark_as_cell(self, viewer=None):
self.mark_point_as_type("cell")

def mark_as_non_cell(self):
def mark_as_non_cell(self, viewer=None):
self.mark_point_as_type("non-cell")

def mark_point_as_type(self, point_type: str):
Expand Down
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