Numba workflow patch (#265)

* Fix numba workflow

* Remove old workflow file now incorporated into test and deploy

.github/workflows/test_and_deploy.yml

@@ -1,4 +1,4 @@
-name: tests
+name: Test (and Deploy to PyPI on tag)
 
 on:
   # Only run on pushes to main, or when version tags are pushed
@@ -22,6 +22,7 @@ concurrency:
 jobs:
   linting:
     runs-on: ubuntu-latest
+    name: Check Linting
     steps:
       - uses: neuroinformatics-unit/actions/lint@v2
 
@@ -65,6 +66,30 @@ jobs:
           python-version: ${{ matrix.python-version }}
           use-xvfb: true
 
+  test_numba_disabled:
+    needs: [linting, manifest]
+    name: Run tests with numba disabled
+    runs-on: ubuntu-latest
+    env:
+       NUMBA_DISABLE_JIT: "1"
+
+    steps:
+      - name: Cache tensorflow model
+        uses: actions/cache@v3
+        with:
+          path: "~/.cellfinder"
+          key: models-${{ hashFiles('~/.cellfinder/**') }}
+      # Setup pyqt libraries
+      - name: Setup qtpy libraries
+        uses: tlambert03/setup-qt-libs@v1
+      # Setup VTK with headless display
+      - uses: pyvista/setup-headless-display-action@v2
+      # Run test suite with numba disabled
+      - uses: neuroinformatics-unit/actions/test@v2
+        with:
+          python-version: "3.10"
+          codecov-flags: "numba"
+
   # Run brainglobe-workflows brainmapper-CLI tests to check for
   # breakages
   # test_brainmapper_cli:
@@ -102,7 +127,7 @@ jobs:
 
   build_sdist_wheel:
     name: Build source distribution and wheel
-    # needs: [test, test_brainmapper_cli]
+    # needs: [test, test_brainmapper_cli, test_numba_disabled]
     needs: [test]
     if: github.event_name == 'push' && github.ref_type == 'tag'
     runs-on: ubuntu-latest