Cellfinder with Keras 3.0 and torch backend #114
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| name: Test Keras include guards | |
| # These tests check that the include guards checking for Keras availability | |
| # behave as expected on ubuntu and macOS. | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| keras_guards: | |
| name: Test include guards | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install cellfinder via pip, specifying tensorflow as keras' backend | |
| run: python -m pip install -e ".[tf]" | |
| - name: Test (working) import | |
| uses: jannekem/run-python-script-action@v1 | |
| with: | |
| fail-on-error: true | |
| script: | | |
| import cellfinder.core | |
| import cellfinder.napari | |
| - name: Uninstall keras | |
| run: python -m pip uninstall -y keras | |
| - name: Test (broken) import | |
| id: broken_import | |
| uses: jannekem/run-python-script-action@v1 | |
| with: | |
| fail-on-error: false | |
| script: | | |
| import cellfinder.core | |
| # exit 1 will force an actions exit with a failure reported | |
| - name: Flag error thrown by broken import | |
| if: steps.broken_import.outputs.error == 'false' | |
| run: | | |
| echo "Broken import test result was: ${{ steps.broken_import.outputs.error }}" | |
| exit 1 | |
| # add an additional step to confirm an error occurred in the import | |
| - name: Confirm error was thrown by broken import | |
| if: steps.broken_import.outputs.error == 'true' | |
| run: | | |
| echo "Broken import test result was: ${{ steps.broken_import.outputs.error }}" |