Update references to plugin names (#228)

brainglobe · Jul 30, 2024 · 34abf61 · 34abf61
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diff --git a/docs/source/tutorials/cellfinder-detection.md b/docs/source/tutorials/cellfinder-detection.md
@@ -16,20 +16,20 @@ You will need `napari` installed on your computer - please follow
 :::
 
 1. Open `napari`.
-2. Install `cellfinder` by selecting `Plugins > Install/Uninstall plugins` and searching for `cellfinder-napari` in the searchbox. If it is not installed yet, click on the `Install` button.
+2. Install `cellfinder` by selecting `Plugins > Install/Uninstall plugins` and searching for `cellfinder` in the searchbox. If it is not installed yet, click on the `Install` button.
 
 :::{caution}
 This may take a while due to the various dependencies being installed.
 
 On Silicon Macs you may have to run `conda install hdf5` on the command line (in your conda environment) first for the installation to be successful.
 :::
 
-3. Open the cell detection widget by selecting `Plugins > cellfinder-napari > Cell detection` in the napari menu bar near the top left of the window.
+3. Open the cell detection widget by selecting `Plugins > cellfinder > Cell detection` in the napari menu bar near the top left of the window.
    ![cellfinder detection widget](./images/cellfinder-napari/cellfinder-napari-detection.png)
 
 **The cell detection widget appears on the right-hand side of the window.**
 
-4. Load some sample data `File > Open sample > Sample data (cellfinder-napari)`. This will open a small two-channel 3D image.
+4. Load some sample data `File > Open sample > Sample data (cellfinder)`. This will open a small two-channel 3D image.
 5. Set the `signal image` to `Signal`
 6. Set the `background image` to `Background`
 7. Ensure that `Voxel size (z)` is set to `5.00`, `Voxel size (y)` is set to `2.00`, and `Voxel size (x)` is set to `2.00`.

diff --git a/docs/source/tutorials/cellfinder-retraining.md b/docs/source/tutorials/cellfinder-retraining.md
@@ -18,8 +18,8 @@ You will need `napari` installed on your computer - please follow
 :::
 
 1. Open `napari`.
-2. Open the curation widget by selecting `Plugins > cellfinder-napari > Curation` in the napari menu bar near the top left of the window.
-3. Load some sample data `File > Open sample > Sample data (cellfinder-napari)`. This will open the same small two-channel 3D image from the detection tutorial.
+2. Open the curation widget by selecting `Plugins > cellfinder > Curation` in the napari menu bar near the top left of the window.
+3. Load some sample data `File > Open sample > Sample data (cellfinder)`. This will open the same small two-channel 3D image from the detection tutorial.
 4. Click `Files > Open File(s)` and select the `cells.xml` from the detection tutorial. If napari prompts you to choose a plugin, choose `brainglobe-napari-io`.
 5. Set the `signal image` to `Signal`
 6. Set the `background image` to `Background`
@@ -35,7 +35,7 @@ widget, or pressing the `3` key on your keyboard.
 11. Click `Save training data`
 12. Create and then select a new directory on your computer (e.g. `cellfinder-retraining`) and click `Choose`.
 13. Close the curation widget by clicking the `x` at the top left of the widget.
-14. Open the retraining widget by selecting `Plugins > cellfinder-napari > Train network` in the napari menu bar near the top left of the window.
+14. Open the retraining widget by selecting `Plugins > cellfinder > Train network` in the napari menu bar near the top left of the window.
 15. Select the data for retraining by clicking `Select files` next to `YAML files` and choose the `training.yml` file 
 is inside the `cellfinder-retraining` directory created earlier
 16. Choose a directory to save the training output, e.g., create a `trained_network` directory

diff --git a/docs/source/tutorials/tutorial-whole-brain-registration.md b/docs/source/tutorials/tutorial-whole-brain-registration.md
@@ -11,8 +11,8 @@ You will need `napari` installed on your computer - please follow [`napari`'s in
 :::
 
 1. Open `napari`.
-2. Install `brainreg-napari` by selecting `Plugins > Install/Uninstall plugins` and searching for `brainreg-napari` in the searchbox. Then click on the `Install` button.
-3. Open the `brainreg` widget by selecting `Plugins > Atlas registration (brainreg-napari)` in the napari menu bar near the top left of the window.
+2. Install `brainreg` by selecting `Plugins > Install/Uninstall plugins` and searching for `brainreg` in the searchbox. Then click on the `Install` button.
+3. Open the `brainreg` widget by selecting `Plugins > Atlas registration (brainreg)` in the napari menu bar near the top left of the window.
 ![brainreg widget](./images/brainreg-napari/plugin-menu-brainreg-napari.png)
 
 **The brainreg widget appears on the right-hand side of the window.**