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Update brainmapper to match cellfinder release candidate #113

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merged 9 commits into from
May 29, 2024
Merged

Update brainmapper to match cellfinder release candidate #113

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b2207ef
Update prep_model_weights to match cellfinder
IgorTatarnikov May 28, 2024
b853c39
Set the backend for torch testing
IgorTatarnikov May 28, 2024
7baab2f
Fixed linting
IgorTatarnikov May 28, 2024
815cdcf
Move keras import inot set_device function
IgorTatarnikov May 28, 2024
13c64e4
Set GIHTUB_ACTIONS env variable to true when testing
IgorTatarnikov May 28, 2024
a31ee29
Added yield statement to not return set_device_arm until after all te…
IgorTatarnikov May 29, 2024
e58e112
Switched to using pytest_sessionstart instead of an autouse fixture
IgorTatarnikov May 29, 2024
11b853e
Fixed linting
IgorTatarnikov May 29, 2024
d61ad68
Remove any changes relating to fixing macOS latest and PyTorch
IgorTatarnikov May 29, 2024
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2 changes: 2 additions & 0 deletions .github/workflows/test_and_deploy.yml
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Expand Up @@ -30,6 +30,8 @@ jobs:
needs: [linting, manifest]
name: ${{ matrix.os }} py${{ matrix.python-version }}
runs-on: ${{ matrix.os }}
env:
KERAS_BACKEND: torch
strategy:
fail-fast: false
matrix:
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1 change: 0 additions & 1 deletion brainglobe_workflows/brainmapper/main.py
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Expand Up @@ -154,7 +154,6 @@ def run_all(args, what_to_run, atlas):
args.model_weights,
args.install_path,
args.model,
args.n_free_cpus,
)
if what_to_run.classify:
if points is None:
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