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Add cell matching support #74

Merged
merged 14 commits into from
Jun 6, 2024
Merged

Add cell matching support #74

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0c58332
Add cell matching methods.
matham May 14, 2024
ccd70d9
Move threshold to matching step so we don't include points too far.
matham May 21, 2024
83bb745
We don't need max. We can just set to threshold.
matham May 21, 2024
48617f6
Pass numba disable in env.
matham May 21, 2024
1bf364a
We need to reset the used cols at each iteration.
matham May 23, 2024
a50f4aa
Add support for pre-extracting zero distance pairs.
matham May 23, 2024
e1ca972
Add option to use scipy optimization.
matham May 23, 2024
fa70e65
Scipy doesn't have callback so don't show progress.
matham May 23, 2024
041b9da
Apply suggestions from code review
matham Jun 3, 2024
f7d1900
fixture to provide cell data for regression testing
alessandrofelder Jun 3, 2024
4e73c40
Merge pull request #1 from brainglobe/fetch-xml-test-data
matham Jun 3, 2024
baea2ad
Remove scipy as an option and fill in scipy as a test.
matham Jun 3, 2024
bb0ed47
Run cov without numba jit and support GH actions pooch cache.
matham Jun 6, 2024
acf0d63
Use proper env variable for pooch cache.
matham Jun 6, 2024
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