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MAINT: move partitioning and collating actions to q2-types #175

Merged
merged 12 commits into from
Sep 20, 2024
Merged

MAINT: move partitioning and collating actions to q2-types #175

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0b4a496
removed all partition actions and changed imports
VinzentRisch May 30, 2024
a26a433
changed get action in eggnogg to types
VinzentRisch May 30, 2024
5320c0d
merge main
VinzentRisch Aug 2, 2024
d7f28fd
merge main
VinzentRisch Sep 3, 2024
7ad1ab9
lint
VinzentRisch Sep 3, 2024
104048b
deleted test_mags.py in partition
VinzentRisch Sep 3, 2024
4984c17
added collate_busco_results to innit
VinzentRisch Sep 3, 2024
7252ca8
changed apths to types for partition and collation actions in pipelines
VinzentRisch Sep 3, 2024
9c5c47a
added busco results to package data
VinzentRisch Sep 13, 2024
4024e50
changed package data
VinzentRisch Sep 13, 2024
fd1f9bd
added resuts* to setup removed explicit paths
VinzentRisch Sep 19, 2024
8f5cc81
Merge branch 'main' into 172_migrate_partition
VinzentRisch Sep 19, 2024
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6 changes: 3 additions & 3 deletions setup.py
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Original file line number Diff line number Diff line change
Expand Up @@ -60,9 +60,9 @@
'data/busco_db/busco_downloads/lineages/lineage_1/hmms/*',
'data/busco_db/busco_downloads/lineages/lineage_1/info/*',
'data/busco_db/busco_downloads/lineages/lineage_1/prfl/*'
'data/busco_results/sample1/*',
'data/busco_results/sample2/*',
'data/busco_results/collated/*',
'data/busco_results/sample1/busco_results.tsv',
'data/busco_results/sample2/busco_results.tsv',
'data/busco_results/collated/busco_results.tsv',
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],
'q2_moshpit.busco.types.tests': [
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