ENH: add action fetch-busco-db and modify evaluate-busco accordingly
#20
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| name: "QIIME2: build and test" | |
| on: issue_comment | |
| jobs: | |
| react: | |
| if: ${{ github.event.issue.pull_request && contains(github.event.comment.body, '/q2ci') }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: peter-evans/create-or-update-comment@v4 | |
| with: | |
| comment-id: ${{ github.event.comment.id }} | |
| body: | | |
| <br /> **Edit:** Running QIIME 2 CI... | |
| reactions: "+1" | |
| ci: | |
| if: ${{ github.event.issue.pull_request && contains(github.event.comment.body, '/q2ci') }} | |
| uses: qiime2/distributions/.github/workflows/lib-ci-dev.yaml@dev | |
| with: | |
| distro: metagenome | |
| additional-reports-path: ./coverage.xml | |
| additional-reports-name: coverage | |
| coverage: | |
| needs: [ci] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/download-artifact@v3 | |
| name: 'Fetch coverage from builds' | |
| with: | |
| name: ${{ needs.ci.outputs.additional-reports-name }} | |
| path: ${{ needs.ci.outputs.additional-reports-path }} | |
| - uses: codecov/codecov-action@v4 | |
| name: 'Upload coverage' | |
| with: | |
| fail_ci_if_error: true | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |